Detailed information of deep learning profile BP000113.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000113.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000VGD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4764 4808 4656 4418 4598 5265 5101 4840 4760 4894 4323 5145 5086 4104 4326 3668 6066 6937 2680 8326 2506 1309 1943 1760 403 6401 296 212 1572 7415 820 3339 318 1567 3743 4851 7037 5221 5811 5167 4750 4578 5190 5009 5856 7931 6112 4293 4654 4641 ]
C [ 5410 5220 5351 5539 5481 4841 4824 5357 5580 5684 5383 3785 3506 5232 5465 8340 4431 5256 5939 2377 5642 9847 1083 16466 19190 11338 12744 19575 2225 1991 7492 3548 401 1817 8527 6355 3436 5068 4361 4778 4936 4718 3918 3556 4784 4590 4911 4827 4132 6428 ]
G [ 5174 5149 5153 5210 5026 4937 4884 4727 4830 5428 4530 6172 7234 6372 5354 3911 4046 4451 4814 6413 9969 1569 13737 1322 205 881 233 119 700 7644 10204 1423 18527 14652 2474 4523 6695 5457 5012 5395 5623 6146 6875 7715 5013 3801 4276 4543 6185 5184 ]
T [ 4907 5078 5095 5088 5150 5212 5446 5331 5085 4249 6019 5153 4429 4547 5110 4336 5712 3611 6822 3139 2138 7530 3492 707 457 1635 6982 349 15758 3205 1739 11945 1009 2219 5511 4526 3087 4509 5071 4915 4946 4813 4272 3975 4602 3933 4956 6592 5284 4002 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.03 -0.07 -0.04 -0.03 0.06 -0.05 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.01 0.04 0.13 -0.02 0.13 0.17 0.10 0.13 0.18 0.03 -0.02 0.05 0.07 -0.03 -0.03 0.06 0.04 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.07 -0.02 0.13 -0.03 -0.05 -0.01 -0.07 -0.03 -0.01 0.06 0.12 -0.02 0.18 0.11 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.05 -0.07 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 36

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages