Detailed information of deep learning profile BP000113.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000113.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000VGD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4002 5284 6592 4956 3933 4602 3975 4272 4813 4946 4915 5071 4509 3087 4526 5511 2219 1009 11945 1739 3205 15758 349 6982 1635 457 707 3492 7530 2138 3139 6822 3611 5712 4336 5110 4547 4429 5153 6019 4249 5085 5331 5446 5212 5150 5088 5095 5078 4907 ]
C [ 5184 6185 4543 4276 3801 5013 7715 6875 6146 5623 5395 5012 5457 6695 4523 2474 14652 18527 1423 10204 7644 700 119 233 881 205 1322 13737 1569 9969 6413 4814 4451 4046 3911 5354 6372 7234 6172 4530 5428 4830 4727 4884 4937 5026 5210 5153 5149 5174 ]
G [ 6428 4132 4827 4911 4590 4784 3556 3918 4718 4936 4778 4361 5068 3436 6355 8527 1817 401 3548 7492 1991 2225 19575 12744 11338 19190 16466 1083 9847 5642 2377 5939 5256 4431 8340 5465 5232 3506 3785 5383 5684 5580 5357 4824 4841 5481 5539 5351 5220 5410 ]
T [ 4641 4654 4293 6112 7931 5856 5009 5190 4578 4750 5167 5811 5221 7037 4851 3743 1567 318 3339 820 7415 1572 212 296 6401 403 1760 1943 1309 2506 8326 2680 6937 6066 3668 4326 4104 5086 5145 4323 4894 4760 4840 5101 5265 4598 4418 4656 4808 4764 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.07 -0.05 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.11 0.18 -0.02 0.12 0.06 -0.01 -0.03 -0.07 -0.01 -0.05 -0.03 0.13 -0.02 0.07 0.05 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.04 0.06 -0.03 -0.03 0.07 0.05 -0.02 0.03 0.18 0.13 0.10 0.17 0.13 -0.02 0.13 0.04 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.05 0.06 -0.03 -0.04 -0.07 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_1

Num. of seqlets: 36

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages