Detailed information of deep learning profile BP000112.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000112.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000EIC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4218 5586 6830 5400 4324 4899 4151 4612 5250 5350 5160 5248 4867 3555 5001 5827 2597 1247 12477 2081 3709 16038 480 7187 2114 539 871 3872 7884 2223 3322 7088 3856 5968 4514 5473 4726 4757 5445 6208 4773 5410 5609 5697 5546 5389 5318 5461 5474 5145 ]
C [ 5559 6424 4836 4580 4101 5320 8087 7186 6435 5895 5750 5314 5884 7064 4835 2876 14979 19192 1861 10281 7941 682 167 264 886 239 1527 14321 1902 10713 6937 5117 4514 4376 4212 5632 6594 7762 6419 4853 5701 5207 4983 5292 5174 5321 5538 5321 5282 5548 ]
G [ 6922 4461 5080 5157 5039 5087 4017 4241 4855 5162 5200 4702 5382 3732 6523 8715 2225 638 3140 8100 2284 2861 20567 13758 12069 20271 17172 1196 10189 5834 2373 6507 5689 4794 8626 5827 5762 3799 4093 5689 5859 5775 5831 5168 5243 5817 5948 5576 5592 5715 ]
T [ 4829 5057 4782 6391 8064 6222 5273 5489 4988 5121 5418 6264 5395 7177 5169 4110 1727 451 4050 1066 7594 1947 314 319 6459 479 1958 2139 1553 2758 8896 2816 7469 6390 4176 4596 4446 5210 5571 4778 5195 5136 5105 5371 5565 5001 4724 5170 5180 5120 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.00 -0.02 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.09 0.14 -0.01 0.09 0.04 -0.01 -0.02 -0.05 -0.00 -0.03 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.00 0.03 0.04 -0.01 -0.02 0.05 0.04 -0.01 0.02 0.14 0.10 0.09 0.14 0.10 -0.01 0.10 0.04 -0.00 0.03 0.02 0.00 0.04 0.02 ]
T [ 0.01 0.00 0.01 -0.00 -0.01 -0.03 -0.06 -0.01 -0.04 0.05 -0.01 -0.03 -0.05 0.02 -0.02 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages