Detailed information of deep learning profile BP000112.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000112.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000EIC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5120 5180 5170 4724 5001 5565 5371 5105 5136 5195 4778 5571 5210 4446 4596 4176 6390 7469 2816 8896 2758 1553 2139 1958 479 6459 319 314 1947 7594 1066 4050 451 1727 4110 5169 7177 5395 6264 5418 5121 4988 5489 5273 6222 8064 6391 4782 5057 4829 ]
C [ 5715 5592 5576 5948 5817 5243 5168 5831 5775 5859 5689 4093 3799 5762 5827 8626 4794 5689 6507 2373 5834 10189 1196 17172 20271 12069 13758 20567 2861 2284 8100 3140 638 2225 8715 6523 3732 5382 4702 5200 5162 4855 4241 4017 5087 5039 5157 5080 4461 6922 ]
G [ 5548 5282 5321 5538 5321 5174 5292 4983 5207 5701 4853 6419 7762 6594 5632 4212 4376 4514 5117 6937 10713 1902 14321 1527 239 886 264 167 682 7941 10281 1861 19192 14979 2876 4835 7064 5884 5314 5750 5895 6435 7186 8087 5320 4101 4580 4836 6424 5559 ]
T [ 5145 5474 5461 5318 5389 5546 5697 5609 5410 4773 6208 5445 4757 4726 5473 4514 5968 3856 7088 3322 2223 7884 3872 871 539 2114 7187 480 16038 3709 2081 12477 1247 2597 5827 5001 3555 4867 5248 5160 5350 5250 4612 4151 4899 4324 5400 6830 5586 4218 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.02 0.02 -0.05 -0.03 -0.01 0.05 -0.04 -0.01 -0.06 -0.03 -0.01 -0.00 0.01 0.00 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.04 0.10 -0.01 0.10 0.14 0.09 0.10 0.14 0.02 -0.01 0.04 0.05 -0.02 -0.01 0.04 0.03 0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.03 -0.00 -0.05 -0.02 -0.01 0.04 0.09 -0.01 0.14 0.09 -0.01 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.02 -0.00 0.01 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 204

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages