Detailed information of deep learning profile BP000111.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000111.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000EGM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.07 0.05 0.13 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5240 4823 4653 6020 7055 5645 4577 5110 4548 4827 5428 5619 5502 5672 5229 3871 5111 6091 2787 1351 12451 2313 4037 16701 508 7034 2570 589 1066 4381 7640 2497 3702 7343 4105 6195 4835 5620 5170 4938 5632 6610 5116 5801 5998 6006 5922 5800 5687 5700 ]
C [ 5392 4365 5798 6537 5169 4807 4290 5732 8380 7615 6787 6292 6028 5578 6206 7340 5227 3102 15780 20219 2001 10853 8228 702 142 201 919 218 1754 14356 2234 10964 7156 5702 4745 4609 4594 5927 7034 8105 6643 4976 5978 5497 5250 5428 5520 5498 5665 5610 ]
G [ 5827 7273 7015 4728 5441 5392 5368 5259 4129 4407 5084 5362 5475 4979 5529 3854 7032 9064 2211 579 3588 8340 2504 2988 21601 15017 12510 21314 17638 1560 11084 6027 2751 6514 5973 5152 8868 6210 5853 4026 4382 5984 6100 5995 6004 5606 5371 6046 6260 5925 ]
T [ 6163 6161 5156 5337 4957 6778 8387 6521 5565 5773 5323 5349 5617 6393 5658 7557 5252 4365 1844 473 4582 1116 7853 2231 371 370 6623 501 2164 2325 1664 3134 9013 3063 7799 6666 4325 4865 4565 5553 5965 5052 5428 5329 5370 5582 5809 5278 5010 5387 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.01 -0.01 -0.02 0.02 -0.02 -0.01 0.07 -0.04 0.03 -0.05 -0.05 -0.05 -0.02 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.09 0.14 -0.02 0.09 0.04 -0.01 -0.03 -0.06 -0.01 -0.03 -0.02 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.05 0.04 -0.01 0.02 0.15 0.11 0.09 0.14 0.11 -0.01 0.11 0.04 -0.01 0.02 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.00 0.01 -0.01 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.02 -0.04 -0.06 0.02 -0.04 0.00 -0.03 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 328

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages