Detailed information of deep learning profile BP000111.1

  1. Home
  2. Deep Learning Profile > BP000111.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000111.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000EGM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.13 0.05 0.07 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5387 5010 5278 5809 5582 5370 5329 5428 5052 5965 5553 4565 4865 4325 6666 7799 3063 9013 3134 1664 2325 2164 501 6623 370 371 2231 7853 1116 4582 473 1844 4365 5252 7557 5658 6393 5617 5349 5323 5773 5565 6521 8387 6778 4957 5337 5156 6161 6163 ]
C [ 5925 6260 6046 5371 5606 6004 5995 6100 5984 4382 4026 5853 6210 8868 5152 5973 6514 2751 6027 11084 1560 17638 21314 12510 15017 21601 2988 2504 8340 3588 579 2211 9064 7032 3854 5529 4979 5475 5362 5084 4407 4129 5259 5368 5392 5441 4728 7015 7273 5827 ]
G [ 5610 5665 5498 5520 5428 5250 5497 5978 4976 6643 8105 7034 5927 4594 4609 4745 5702 7156 10964 2234 14356 1754 218 919 201 142 702 8228 10853 2001 20219 15780 3102 5227 7340 6206 5578 6028 6292 6787 7615 8380 5732 4290 4807 5169 6537 5798 4365 5392 ]
T [ 5700 5687 5800 5922 6006 5998 5801 5116 6610 5632 4938 5170 5620 4835 6195 4105 7343 3702 2497 7640 4381 1066 589 2570 7034 508 16701 4037 2313 12451 1351 2787 6091 5111 3871 5229 5672 5502 5619 5428 4827 4548 5110 4577 5645 7055 6020 4653 4823 5240 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.03 0.00 -0.04 0.02 -0.06 -0.04 -0.02 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.01 0.01 0.00 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.02 -0.01 0.04 0.11 -0.01 0.11 0.14 0.09 0.11 0.15 0.02 -0.01 0.04 0.05 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.03 -0.01 -0.06 -0.03 -0.01 0.04 0.09 -0.02 0.14 0.09 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.02 -0.05 -0.05 -0.05 0.03 -0.04 0.07 -0.01 -0.02 0.02 -0.02 -0.01 0.01 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 328

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages