Detailed information of deep learning profile BP000110.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in IMR-90 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000110.1
Cell line/tissue: IMR-90
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000EFI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4911 4553 4726 5248 5170 4947 4928 5010 4455 5158 4989 4243 4322 3822 5937 6990 2908 8171 2745 1618 2027 1742 378 5570 353 257 1665 7126 861 3757 350 1518 3948 4809 6829 5211 5957 5322 4809 4775 5157 4989 5947 7963 6191 4275 4832 4751 5584 5727 ]
C [ 5497 5722 5741 5270 5204 5649 5810 5695 5714 4259 3958 5648 5770 8419 4884 5596 6309 2672 5538 10134 1417 16480 19747 12060 13539 20052 2561 2239 7752 3506 427 1922 8748 6601 3541 5323 4579 4974 5163 4704 4166 3750 5035 4846 5183 5020 4248 6715 6862 5385 ]
G [ 5350 5488 5208 5058 5085 5021 5033 5594 4843 6272 7299 6402 5441 4253 4383 4494 5015 6631 10253 2066 13508 1696 224 1034 311 146 752 8055 10438 1629 19064 15160 2777 4829 7207 5852 5150 5623 5763 6371 7295 8133 5215 4059 4444 4724 6506 5381 4217 5109 ]
T [ 5096 5091 5179 5278 5395 5237 5083 4555 5842 5165 4608 4561 5321 4360 5650 3774 6622 3380 2318 7036 3902 936 505 2190 6651 399 15876 3434 1803 11962 1013 2254 5381 4615 3277 4468 5168 4935 5119 5004 4236 3982 4657 3986 5036 6835 5268 4007 4191 4633 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.06 -0.03 -0.02 0.05 -0.04 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.00 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.15 0.09 0.11 0.16 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.05 0.04 0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.03 -0.00 -0.06 -0.03 -0.01 0.04 0.10 -0.02 0.16 0.10 -0.01 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 456

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 208

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages