Detailed information of deep learning profile BP000109.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000109.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DZN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.01 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.01 0.07 -0.00 0.13 0.20 0.06 0.09 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.04 -0.00 0.11 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.02 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4808 4962 4755 4507 4632 5435 5204 4936 4878 4915 4421 5345 5060 4024 4248 3811 6073 7181 2475 8714 2287 1259 1955 1770 375 6941 215 343 1949 6994 1026 3840 415 1697 3691 4900 6792 5126 5693 5084 4771 4796 5232 5087 5858 7489 6134 4607 4931 4695 ]
C [ 5582 5276 5460 5584 5563 4922 4941 5452 5610 5841 5522 3618 3290 5329 5763 8587 4451 5452 5899 2071 5824 10019 874 17373 19708 10896 13345 19574 2759 2370 7776 3412 492 2077 8636 6376 3602 5253 4628 4983 5061 4769 4233 3836 4912 4979 4990 5026 4254 6447 ]
G [ 5283 5194 5241 5292 5173 4983 4887 4817 5034 5588 4359 6536 7848 6706 5411 3824 4124 4410 5246 6856 10578 1269 14458 830 124 880 181 174 744 7603 9879 1739 18357 14388 2882 4640 6725 5596 5051 5575 5771 6148 6788 7637 5291 4081 4555 4660 6127 5322 ]
T [ 4932 5173 5149 5222 5237 5265 5573 5400 5083 4261 6303 5106 4407 4546 5183 4383 5957 3562 6985 2964 1916 8058 3318 632 398 1888 6864 514 15153 3638 1924 11614 1341 2443 5396 4689 3486 4630 5233 4963 5002 4892 4352 4045 4544 4056 4926 6312 5293 4141 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.01 0.02 0.04 -0.05 0.04 -0.01 -0.07 -0.02 0.01 -0.03 0.04 -0.08 -0.03 -0.02 0.07 -0.06 -0.02 -0.09 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 ]
C [ 0.02 0.02 0.05 0.00 0.03 0.04 -0.01 0.06 0.16 -0.02 0.16 0.21 0.12 0.16 0.20 0.03 -0.01 0.06 0.08 -0.02 -0.02 0.07 0.05 0.01 0.02 0.01 0.02 ]
G [ 0.03 0.03 0.01 0.02 0.02 0.05 0.06 0.09 -0.01 0.16 -0.03 -0.04 0.01 -0.06 -0.03 -0.00 0.06 0.13 -0.01 0.20 0.13 -0.01 0.04 0.05 0.02 0.01 0.02 ]
T [ 0.01 0.01 -0.00 0.02 -0.02 0.04 -0.02 -0.03 0.03 -0.02 -0.06 -0.06 -0.08 0.06 -0.05 0.10 -0.01 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 899

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 28

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages