Detailed information of deep learning profile BP000107.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in WI38 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000107.1
Cell line/tissue: WI38
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DYB
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.06 0.18 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4164 3678 3358 5055 6607 4607 3370 4165 3426 3844 4530 4770 4731 4804 4211 2749 3999 5107 1794 516 12004 1271 2919 15212 219 6669 1411 397 805 3144 6999 2071 2889 6486 3437 5345 4140 4799 4389 4036 4888 5679 4003 4674 5003 5158 4948 4794 4797 4832 ]
C [ 4355 3335 4767 5792 3888 3596 3106 4596 7605 6525 5880 5188 4833 4242 4965 6104 4056 2098 14290 17624 1138 10270 7231 511 81 181 754 288 1287 12523 1660 9003 5896 4370 3748 3587 3503 4974 5858 6784 5571 3963 5069 4349 4238 4293 4239 4477 4757 4712 ]
G [ 4524 6286 6280 3340 4329 4402 4105 4159 2941 3371 4048 4212 4163 3795 4490 2871 6002 7845 1306 238 2619 6424 1424 1693 18145 11437 10622 17495 14911 1097 8608 5301 2226 5330 4887 4191 7467 4893 4655 3134 3350 4966 4786 5047 4804 4292 4346 5093 4844 4717 ]
T [ 5526 5270 4164 4382 3745 5964 7988 5649 4597 4829 4111 4399 4842 5728 4903 6845 4512 3519 1179 191 2808 604 6995 1153 124 282 5782 389 1566 1805 1302 2194 7558 2383 6497 5446 3459 3903 3667 4615 4760 3961 4711 4499 4524 4826 5036 4205 4171 4308 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.11 -0.07 0.05 -0.07 -0.06 -0.05 -0.02 0.02 -0.03 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.04 0.02 0.02 0.03 0.06 0.05 -0.01 0.14 0.21 -0.03 0.13 0.06 -0.00 -0.02 -0.06 0.00 -0.04 -0.02 0.13 -0.02 0.07 0.05 0.03 0.02 0.02 0.01 0.02 ]
G [ 0.02 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.03 0.08 0.06 -0.01 0.03 0.20 0.14 0.11 0.19 0.13 -0.02 0.13 0.05 -0.00 0.03 0.03 0.01 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.07 -0.04 -0.05 -0.08 0.01 -0.05 -0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages