Detailed information of deep learning profile BP000107.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in WI38 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000107.1
Cell line/tissue: WI38
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DYB
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.18 0.06 0.08 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4308 4171 4205 5036 4826 4524 4499 4711 3961 4760 4615 3667 3903 3459 5446 6497 2383 7558 2194 1302 1805 1566 389 5782 282 124 1153 6995 604 2808 191 1179 3519 4512 6845 4903 5728 4842 4399 4111 4829 4597 5649 7988 5964 3745 4382 4164 5270 5526 ]
C [ 4717 4844 5093 4346 4292 4804 5047 4786 4966 3350 3134 4655 4893 7467 4191 4887 5330 2226 5301 8608 1097 14911 17495 10622 11437 18145 1693 1424 6424 2619 238 1306 7845 6002 2871 4490 3795 4163 4212 4048 3371 2941 4159 4105 4402 4329 3340 6280 6286 4524 ]
G [ 4712 4757 4477 4239 4293 4238 4349 5069 3963 5571 6784 5858 4974 3503 3587 3748 4370 5896 9003 1660 12523 1287 288 754 181 81 511 7231 10270 1138 17624 14290 2098 4056 6104 4965 4242 4833 5188 5880 6525 7605 4596 3106 3596 3888 5792 4767 3335 4355 ]
T [ 4832 4797 4794 4948 5158 5003 4674 4003 5679 4888 4036 4389 4799 4140 5345 3437 6486 2889 2071 6999 3144 805 397 1411 6669 219 15212 2919 1271 12004 516 1794 5107 3999 2749 4211 4804 4731 4770 4530 3844 3426 4165 3370 4607 6607 5055 3358 3678 4164 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.01 -0.06 -0.03 -0.01 -0.05 0.01 -0.08 -0.05 -0.04 0.07 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.03 -0.00 0.05 0.13 -0.02 0.13 0.19 0.11 0.14 0.20 0.03 -0.01 0.06 0.08 -0.03 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.02 ]
G [ 0.02 0.01 0.02 0.02 0.03 0.05 0.07 -0.02 0.13 -0.02 -0.04 0.00 -0.06 -0.02 -0.00 0.06 0.13 -0.03 0.21 0.14 -0.01 0.05 0.06 0.03 0.02 0.02 0.04 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.02 -0.05 -0.06 -0.07 0.05 -0.07 0.11 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages