Detailed information of deep learning profile BP000106.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in WERI-Rb-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000106.1
Cell line/tissue: WERI-Rb-1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.17 0.08 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4764 4464 4022 5526 6700 5319 4175 4822 4015 4391 5008 5122 5061 5400 4810 3392 4723 5706 2481 1335 11920 2027 3581 15597 439 6492 2484 559 1157 3894 7290 2490 3351 6779 3802 5703 4452 5345 4786 4605 5160 5942 4704 5167 5338 5470 5308 5273 5188 5136 ]
C [ 5117 4046 5469 6382 4942 4510 4116 5203 8113 7296 6382 5862 5790 5203 5725 6996 4813 2914 15083 18712 1995 10115 8076 690 143 214 877 312 1815 13334 2311 10051 6658 5134 4680 4478 4456 5650 6397 7293 6214 5028 5566 5282 5096 5259 5250 5362 5447 5335 ]
G [ 5657 6945 7006 4456 5106 5179 5183 5046 3998 4194 4801 5151 5173 4641 5371 3732 6470 8491 2013 644 2960 7965 2347 2745 20228 14031 11321 19747 16286 1494 9771 5737 2797 6307 5717 4976 8195 5747 5682 4203 4438 5610 5808 5736 5757 5254 5267 5676 5719 5653 ]
T [ 5596 5679 4637 4770 4386 6126 7660 6063 5008 5253 4943 4999 5110 5890 5228 7014 5128 4023 1557 443 4259 1027 7130 2102 324 397 6452 516 1876 2412 1762 2856 8328 2914 6935 5977 4031 4392 4269 5033 5322 4554 5056 4949 4943 5151 5309 4823 4780 5010 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.04 0.03 -0.05 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.00 -0.01 -0.00 ]
C [ 0.02 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.01 0.11 0.06 -0.01 -0.03 -0.06 -0.00 -0.03 -0.03 0.12 -0.01 0.07 0.04 0.03 0.02 0.02 0.02 0.02 ]
G [ 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.03 0.06 0.05 -0.00 0.04 0.18 0.13 0.10 0.16 0.12 -0.02 0.12 0.04 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.06 -0.01 -0.04 -0.06 0.02 -0.04 -0.00 -0.02 -0.05 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 126

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages