Detailed information of deep learning profile BP000106.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in WERI-Rb-1 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000106.1
Cell line/tissue: WERI-Rb-1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.08 0.17 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5010 4780 4823 5309 5151 4943 4949 5056 4554 5322 5033 4269 4392 4031 5977 6935 2914 8328 2856 1762 2412 1876 516 6452 397 324 2102 7130 1027 4259 443 1557 4023 5128 7014 5228 5890 5110 4999 4943 5253 5008 6063 7660 6126 4386 4770 4637 5679 5596 ]
C [ 5653 5719 5676 5267 5254 5757 5736 5808 5610 4438 4203 5682 5747 8195 4976 5717 6307 2797 5737 9771 1494 16286 19747 11321 14031 20228 2745 2347 7965 2960 644 2013 8491 6470 3732 5371 4641 5173 5151 4801 4194 3998 5046 5183 5179 5106 4456 7006 6945 5657 ]
G [ 5335 5447 5362 5250 5259 5096 5282 5566 5028 6214 7293 6397 5650 4456 4478 4680 5134 6658 10051 2311 13334 1815 312 877 214 143 690 8076 10115 1995 18712 15083 2914 4813 6996 5725 5203 5790 5862 6382 7296 8113 5203 4116 4510 4942 6382 5469 4046 5117 ]
T [ 5136 5188 5273 5308 5470 5338 5167 4704 5942 5160 4605 4786 5345 4452 5703 3802 6779 3351 2490 7290 3894 1157 559 2484 6492 439 15597 3581 2027 11920 1335 2481 5706 4723 3392 4810 5400 5061 5122 5008 4391 4015 4822 4175 5319 6700 5526 4022 4464 4764 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.05 -0.02 -0.00 -0.04 0.02 -0.06 -0.04 -0.01 0.06 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.12 -0.02 0.12 0.16 0.10 0.13 0.18 0.04 -0.00 0.05 0.06 -0.03 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 ]
G [ 0.02 0.02 0.02 0.02 0.03 0.04 0.07 -0.01 0.12 -0.03 -0.03 -0.00 -0.06 -0.03 -0.01 0.06 0.11 -0.01 0.17 0.11 -0.01 0.03 0.05 0.02 0.01 0.02 ]
T [ -0.00 -0.01 0.00 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.05 0.03 -0.04 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 180

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 126

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages