Detailed information of deep learning profile BP000105.1

  1. Home
  2. Deep Learning Profile > BP000105.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000105.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.22 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.23 0.10 0.07 0.21 0.14 0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 5210 4639 4374 6002 7538 5683 4451 5273 4202 4760 5367 5642 5517 5690 4995 3648 5083 6262 2530 1228 13275 2055 3630 17886 373 7114 2319 585 1090 4170 7778 2630 3801 7319 4101 6131 4868 5856 5161 5206 5727 6500 4979 5693 5869 5911 5712 5710 5647 5732 ]
C [ 5660 4565 6115 7244 5209 4946 4563 5799 9040 8000 7026 6404 6314 5707 6527 7798 5299 2987 16992 20931 1922 11642 9034 717 131 260 1085 377 1994 15100 2495 11314 7033 5513 5096 4888 4862 6225 6874 7947 6892 5609 6298 5840 5605 5762 5842 5894 6147 5950 ]
G [ 6028 7710 7646 4756 5546 5822 5424 5582 4362 4625 5444 5792 5662 5084 5852 3957 7427 9639 2078 628 3848 8597 2360 2772 22469 15461 13449 21719 18161 1545 11131 6257 3110 7140 6291 5487 9087 6318 6513 4643 4950 6121 6415 6304 6331 5843 5808 6362 6462 6159 ]
T [ 6306 6290 5069 5202 4911 6753 8766 6550 5600 5819 5367 5366 5711 6723 5830 7801 5395 4316 1604 417 4159 910 8180 1829 231 369 6351 523 1959 2389 1800 3003 9260 3232 7716 6698 4387 4805 4656 5408 5635 4974 5512 5367 5399 5688 5842 5238 4948 5363 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.04 0.05 -0.02 -0.01 0.12 -0.06 0.05 -0.07 -0.07 -0.07 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 -0.00 ]
C [ 0.03 0.02 0.01 0.02 0.07 0.05 -0.01 0.15 0.23 -0.01 0.15 0.08 0.00 -0.04 -0.07 0.00 -0.04 -0.03 0.15 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.05 0.07 -0.03 -0.03 0.09 0.07 -0.00 0.05 0.24 0.17 0.14 0.22 0.16 -0.02 0.15 0.05 -0.00 0.03 0.03 0.01 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.10 -0.02 -0.07 0.07 -0.03 -0.04 -0.08 0.03 -0.05 0.00 -0.03 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 832

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 140

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages