Detailed information of deep learning profile BP000104.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in bronchial epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000104.1
Cell line/tissue: bronchial epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.01 0.01 -0.00 0.02 0.08 0.00 0.15 0.24 0.07 0.11 0.27 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.12 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.09 0.00 0.26 0.14 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.10 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4893 4641 4855 5306 5272 4943 5024 5118 4448 5147 4991 4327 4468 4048 5971 7057 3006 8272 2789 1616 2256 1943 594 6415 374 226 1643 7350 793 3764 230 1392 3903 5100 7105 5414 6248 5335 4852 4777 5300 5037 6040 8137 6117 4293 4855 4625 5854 5845 ]
C [ 5443 5505 5478 5118 5002 5426 5567 5564 5443 4234 4087 5408 5518 7939 4837 5379 6090 2827 5569 9845 1613 15805 19187 11089 13431 20050 2481 2129 7684 3206 381 1701 8567 6392 3261 5034 4381 4899 5076 4672 4024 3621 4846 4600 5023 4958 4053 6864 6623 5198 ]
G [ 5253 5290 5087 5025 4865 4904 5040 5508 4759 6192 7052 6226 5559 4314 4315 4413 5051 6197 9907 2229 12990 1882 401 1089 218 146 606 7826 10645 1373 19445 15458 2582 4615 7137 5734 4919 5433 5576 6268 7024 8176 5008 3896 4392 4557 6392 5273 4034 5007 ]
T [ 5159 5312 5328 5299 5609 5475 5117 4558 6098 5175 4618 4787 5203 4447 5625 3899 6601 3452 2483 7058 3889 1118 566 2155 6725 326 16018 3443 1626 12405 692 2197 5696 4641 3245 4566 5200 5081 5244 5031 4400 3914 4854 4115 5216 6940 5448 3986 4237 4698 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.01 -0.08 -0.04 0.00 -0.06 0.03 -0.09 -0.06 -0.03 0.09 -0.08 -0.03 -0.12 -0.06 -0.03 -0.01 0.03 0.01 0.01 ]
C [ 0.03 0.05 0.01 0.04 0.04 -0.00 0.06 0.18 -0.02 0.18 0.25 0.15 0.20 0.28 0.04 -0.01 0.08 0.11 -0.03 -0.04 0.08 0.05 -0.00 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.05 0.09 -0.02 0.17 -0.03 -0.05 0.01 -0.09 -0.03 0.01 0.09 0.17 -0.01 0.27 0.18 -0.01 0.05 0.07 0.03 0.01 ]
T [ -0.00 -0.01 0.01 -0.03 0.03 -0.03 -0.03 0.02 -0.02 -0.07 -0.08 -0.08 0.06 -0.07 0.13 -0.02 -0.03 0.05 -0.04 -0.02 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 939

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 698

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages