Detailed information of deep learning profile BP000104.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in bronchial epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000104.1
Cell line/tissue: bronchial epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.10 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.14 0.26 0.00 0.09 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.12 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.27 0.11 0.07 0.24 0.15 0.00 0.08 0.02 -0.00 0.01 0.01 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.01 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4698 4237 3986 5448 6940 5216 4115 4854 3914 4400 5031 5244 5081 5200 4566 3245 4641 5696 2197 692 12405 1626 3443 16018 326 6725 2155 566 1118 3889 7058 2483 3452 6601 3899 5625 4447 5203 4787 4618 5175 6098 4558 5117 5475 5609 5299 5328 5312 5159 ]
C [ 5007 4034 5273 6392 4557 4392 3896 5008 8176 7024 6268 5576 5433 4919 5734 7137 4615 2582 15458 19445 1373 10645 7826 606 146 218 1089 401 1882 12990 2229 9907 6197 5051 4413 4315 4314 5559 6226 7052 6192 4759 5508 5040 4904 4865 5025 5087 5290 5253 ]
G [ 5198 6623 6864 4053 4958 5023 4600 4846 3621 4024 4672 5076 4899 4381 5034 3261 6392 8567 1701 381 3206 7684 2129 2481 20050 13431 11089 19187 15805 1613 9845 5569 2827 6090 5379 4837 7939 5518 5408 4087 4234 5443 5564 5567 5426 5002 5118 5478 5505 5443 ]
T [ 5845 5854 4625 4855 4293 6117 8137 6040 5037 5300 4777 4852 5335 6248 5414 7105 5100 3903 1392 230 3764 793 7350 1643 226 374 6415 594 1943 2256 1616 2789 8272 3006 7057 5971 4048 4468 4327 4991 5147 4448 5118 5024 4943 5272 5306 4855 4641 4893 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.04 0.05 -0.03 -0.02 0.13 -0.07 0.06 -0.08 -0.08 -0.07 -0.02 0.02 -0.03 -0.03 0.03 -0.03 0.01 -0.01 -0.00 ]
C [ 0.01 0.03 0.07 0.05 -0.01 0.18 0.27 -0.01 0.17 0.09 0.01 -0.03 -0.09 0.01 -0.05 -0.03 0.17 -0.02 0.09 0.05 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 -0.00 0.05 0.08 -0.04 -0.03 0.11 0.08 -0.01 0.04 0.28 0.20 0.15 0.25 0.18 -0.02 0.18 0.06 -0.00 0.04 0.04 0.01 0.05 0.03 ]
T [ 0.01 0.01 0.03 -0.01 -0.03 -0.06 -0.12 -0.03 -0.08 0.09 -0.03 -0.06 -0.09 0.03 -0.06 0.00 -0.04 -0.08 -0.01 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 939

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 698

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages