Detailed information of deep learning profile BP000103.1

  1. Home
  2. Deep Learning Profile > BP000103.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in epithelial cell of proximal tubule using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000103.1
Cell line/tissue: epithelial cell of proximal tubule
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.02 0.00 ]
C [ -0.00 0.22 0.29 0.11 0.12 0.28 -0.00 -0.00 0.01 0.01 0.00 -0.01 0.04 0.02 -0.00 -0.00 ]
G [ 0.15 0.00 0.00 0.00 0.00 -0.00 -0.00 0.07 0.08 0.01 0.29 0.16 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.03 0.00 0.16 -0.01 0.00 0.05 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4 0 0 11 0 0 4 9 4 4 1 1 5 9 21 12 7 6 6 3 10 8 9 8 6 3 4 11 12 14 6 8 14 4 8 9 6 9 7 7 13 8 9 7 5 8 11 9 6 17 ]
C [ 2 52 53 40 32 51 4 3 22 11 0 6 34 31 11 21 25 32 33 38 35 25 21 24 33 38 38 26 19 19 29 23 19 21 27 27 20 18 15 16 25 15 20 19 21 16 21 21 15 19 ]
G [ 41 1 0 2 3 1 1 37 26 7 51 43 4 9 16 14 13 7 7 6 2 8 14 11 5 7 6 6 7 10 5 11 9 16 10 7 10 15 15 18 6 18 14 15 15 14 9 14 17 9 ]
T [ 6 0 0 0 18 1 44 4 1 31 1 3 10 4 5 6 8 8 7 6 6 12 9 10 9 5 5 10 15 10 13 11 11 12 8 10 17 11 16 12 9 12 10 12 12 15 12 9 15 8 ]

Hypothetical CWM

   
A [ -0.03 0.00 -0.07 0.07 -0.12 -0.07 -0.00 0.11 -0.10 -0.04 -0.15 -0.07 -0.02 -0.00 0.05 0.01 ]
C [ -0.06 0.22 0.29 0.14 0.21 0.28 0.01 -0.06 0.03 0.08 -0.09 -0.08 0.07 0.03 -0.02 0.01 ]
G [ 0.19 -0.09 -0.11 -0.02 -0.15 -0.09 -0.03 0.10 0.17 -0.04 0.29 0.18 -0.03 0.05 0.06 0.01 ]
T [ -0.02 -0.09 -0.11 -0.10 0.08 -0.09 0.17 -0.03 -0.05 0.08 -0.05 -0.02 0.03 -0.02 -0.03 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20821

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 35

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages