Detailed information of deep learning profile BP000101.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000101.1
Cell line/tissue: keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.10 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.01 0.02 0.01 -0.00 0.14 0.24 0.00 0.08 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.25 0.10 0.07 0.21 0.13 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4389 3879 3627 5141 6759 4906 3727 4461 3629 4060 4804 5064 4880 4834 4275 2988 4384 5261 1979 801 11595 1576 3154 14644 324 6207 2207 675 1286 3934 6552 2514 3393 6157 3719 5273 4210 4888 4533 4352 4774 5588 4373 4819 5126 5066 4938 5011 4960 4731 ]
C [ 4563 3431 4764 5881 4073 3849 3260 4586 7865 6629 5777 5159 4894 4510 5243 6502 4323 2320 14377 17750 1254 9888 7010 507 160 312 1123 518 1933 11269 2233 8591 5482 4447 4072 3903 3892 5055 5492 6241 5468 4248 4931 4568 4442 4481 4560 4545 4730 4785 ]
G [ 4604 6216 6377 3590 4386 4466 4116 4363 3046 3463 4086 4396 4292 3911 4517 2940 5602 7801 1503 342 2672 6932 1851 2407 18374 12131 9919 17128 14093 1642 8658 5233 2750 5610 4936 4282 7099 5020 4972 3757 3977 4947 5052 5061 4966 4617 4631 4962 5031 4973 ]
T [ 5569 5599 4357 4513 3907 5904 8022 5715 4585 4973 4458 4506 5059 5870 5090 6695 4816 3743 1266 232 3604 729 7110 1567 267 475 5876 804 1813 2280 1682 2787 7500 2911 6398 5667 3924 4162 4128 4775 4906 4342 4769 4677 4591 4961 4996 4607 4404 4636 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.04 -0.02 0.03 -0.01 -0.04 0.05 -0.03 -0.02 0.13 -0.09 0.05 -0.07 -0.08 -0.06 -0.01 0.03 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.03 0.08 0.06 -0.01 0.17 0.26 -0.02 0.16 0.07 -0.02 -0.04 -0.09 -0.00 -0.05 -0.03 0.15 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 -0.00 0.05 0.08 -0.04 -0.05 0.09 0.07 -0.02 0.04 0.26 0.18 0.14 0.22 0.16 -0.02 0.16 0.06 -0.01 0.04 0.03 0.01 0.05 0.02 ]
T [ 0.01 0.01 0.03 -0.01 -0.02 -0.07 -0.11 -0.03 -0.09 0.08 -0.04 -0.05 -0.08 0.02 -0.05 -0.00 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 538

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages