Detailed information of deep learning profile BP000101.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000101.1
Cell line/tissue: keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.13 0.21 0.07 0.10 0.25 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.08 0.00 0.24 0.14 -0.00 0.01 0.02 0.01 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.10 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4636 4404 4607 4996 4961 4591 4677 4769 4342 4906 4775 4128 4162 3924 5667 6398 2911 7500 2787 1682 2280 1813 804 5876 475 267 1567 7110 729 3604 232 1266 3743 4816 6695 5090 5870 5059 4506 4458 4973 4585 5715 8022 5904 3907 4513 4357 5599 5569 ]
C [ 4973 5031 4962 4631 4617 4966 5061 5052 4947 3977 3757 4972 5020 7099 4282 4936 5610 2750 5233 8658 1642 14093 17128 9919 12131 18374 2407 1851 6932 2672 342 1503 7801 5602 2940 4517 3911 4292 4396 4086 3463 3046 4363 4116 4466 4386 3590 6377 6216 4604 ]
G [ 4785 4730 4545 4560 4481 4442 4568 4931 4248 5468 6241 5492 5055 3892 3903 4072 4447 5482 8591 2233 11269 1933 518 1123 312 160 507 7010 9888 1254 17750 14377 2320 4323 6502 5243 4510 4894 5159 5777 6629 7865 4586 3260 3849 4073 5881 4764 3431 4563 ]
T [ 4731 4960 5011 4938 5066 5126 4819 4373 5588 4774 4352 4533 4888 4210 5273 3719 6157 3393 2514 6552 3934 1286 675 2207 6207 324 14644 3154 1576 11595 801 1979 5261 4384 2988 4275 4834 4880 5064 4804 4060 3629 4461 3727 4906 6759 5141 3627 3879 4389 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 -0.00 -0.05 0.02 -0.08 -0.05 -0.04 0.08 -0.09 -0.03 -0.11 -0.07 -0.02 -0.01 0.03 0.01 0.01 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.01 0.06 0.16 -0.02 0.16 0.22 0.14 0.18 0.26 0.04 -0.02 0.07 0.09 -0.05 -0.04 0.08 0.05 -0.00 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.15 -0.03 -0.05 -0.00 -0.09 -0.04 -0.02 0.07 0.16 -0.02 0.26 0.17 -0.01 0.06 0.08 0.03 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.01 -0.06 -0.08 -0.07 0.05 -0.09 0.13 -0.02 -0.03 0.05 -0.04 -0.01 0.03 -0.02 -0.04 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 538

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages