Detailed information of deep learning profile BP000100.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin fibroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000100.1
Cell line/tissue: foreskin fibroblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.09 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4949 4438 4190 5570 7253 5429 4139 4822 4063 4654 5190 5543 5171 5380 4666 3404 4850 5761 2228 829 12919 1771 3672 16444 451 6914 2522 791 1412 4501 6998 2871 3849 6766 4207 5923 4703 5518 4919 5007 5542 6093 4932 5266 5551 5629 5519 5436 5508 5379 ]
C [ 5279 4224 5593 6820 4808 4665 4079 5380 8678 7574 6755 5905 5711 5186 6192 7566 4957 2783 16223 20196 1477 11162 8342 731 149 285 1214 591 2225 12806 2676 9908 6664 5061 4669 4480 4504 5572 6498 7349 6293 5047 5759 5246 5273 5222 5265 5393 5473 5540 ]
G [ 5418 7010 7170 4221 5097 5238 4918 5133 3733 4184 4807 5257 5041 4628 5283 3500 6807 9035 1816 414 3354 7880 2126 2741 20833 14040 12503 19507 16012 1861 10013 5742 3268 6461 5912 5137 8231 6011 5723 4283 4507 5786 5713 6010 5677 5359 5417 5923 5861 5675 ]
T [ 6059 6033 4752 5094 4547 6373 8569 6370 5231 5293 4953 5000 5782 6511 5564 7235 5091 4126 1438 266 3955 892 7565 1789 272 466 5466 816 2056 2537 2018 3184 7924 3417 6917 6165 4267 4604 4565 5066 5363 4779 5301 5183 5204 5495 5504 4953 4863 5111 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.08 -0.04 0.04 -0.05 -0.05 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.02 0.10 0.04 -0.01 -0.03 -0.06 -0.00 -0.03 -0.02 0.10 -0.01 0.05 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.06 0.04 -0.01 0.02 0.16 0.11 0.09 0.14 0.10 -0.01 0.10 0.03 -0.00 0.02 0.02 0.01 0.03 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.07 -0.02 -0.05 0.05 -0.02 -0.04 -0.06 0.01 -0.04 -0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 41

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages