Detailed information of deep learning profile BP000100.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin fibroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000100.1
Cell line/tissue: foreskin fibroblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.09 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5111 4863 4953 5504 5495 5204 5183 5301 4779 5363 5066 4565 4604 4267 6165 6917 3417 7924 3184 2018 2537 2056 816 5466 466 272 1789 7565 892 3955 266 1438 4126 5091 7235 5564 6511 5782 5000 4953 5293 5231 6370 8569 6373 4547 5094 4752 6033 6059 ]
C [ 5675 5861 5923 5417 5359 5677 6010 5713 5786 4507 4283 5723 6011 8231 5137 5912 6461 3268 5742 10013 1861 16012 19507 12503 14040 20833 2741 2126 7880 3354 414 1816 9035 6807 3500 5283 4628 5041 5257 4807 4184 3733 5133 4918 5238 5097 4221 7170 7010 5418 ]
G [ 5540 5473 5393 5265 5222 5273 5246 5759 5047 6293 7349 6498 5572 4504 4480 4669 5061 6664 9908 2676 12806 2225 591 1214 285 149 731 8342 11162 1477 20196 16223 2783 4957 7566 6192 5186 5711 5905 6755 7574 8678 5380 4079 4665 4808 6820 5593 4224 5279 ]
T [ 5379 5508 5436 5519 5629 5551 5266 4932 6093 5542 5007 4919 5518 4703 5923 4207 6766 3849 2871 6998 4501 1412 791 2522 6914 451 16444 3672 1771 12919 829 2228 5761 4850 3404 4666 5380 5171 5543 5190 4654 4063 4822 4139 5429 7253 5570 4190 4438 4949 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.01 -0.06 -0.04 -0.02 0.05 -0.05 -0.02 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.03 0.01 0.02 0.02 -0.00 0.03 0.10 -0.01 0.10 0.14 0.09 0.11 0.16 0.02 -0.01 0.04 0.06 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.05 -0.01 0.10 -0.02 -0.03 -0.00 -0.06 -0.03 -0.01 0.04 0.10 -0.02 0.16 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.04 -0.04 0.08 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 339

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 41

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages