Detailed information of deep learning profile BP000097.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000097.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 0.00 0.11 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4785 4520 4673 5139 5144 4933 4772 4920 4464 5143 5029 4140 4394 3939 5882 6837 2868 7884 2808 1729 2176 1868 575 5744 399 238 1678 7314 826 3737 299 1312 3873 4539 7025 5159 5813 5061 4839 4675 5185 4829 5959 7982 6063 4169 4662 4513 5768 5724 ]
C [ 5491 5690 5480 5153 5184 5502 5650 5749 5513 4255 4002 5544 5611 7852 4883 5498 6084 2836 5534 9679 1635 15661 19047 11827 13655 19848 2488 2014 7450 3310 444 1697 8526 6757 3520 5199 4532 4956 4937 4685 3892 3647 4850 4791 5144 5046 4123 6920 6827 5317 ]
G [ 5238 5329 5156 5209 4977 4856 5083 5397 4753 6072 7078 6249 5489 4414 4278 4430 5087 6429 9847 2399 12907 1902 402 979 255 157 609 7893 10631 1585 18901 15442 2636 4760 6902 5684 5106 5642 5783 6398 7258 8272 5073 3837 4361 4504 6404 5304 3901 5003 ]
T [ 5075 5050 5280 5088 5284 5298 5084 4523 5859 5119 4480 4656 5095 4384 5546 3824 6550 3440 2400 6782 3871 1158 565 2039 6280 346 15814 3368 1682 11957 945 2138 5554 4533 3142 4547 5138 4930 5030 4831 4254 3841 4707 3979 5021 6870 5400 3852 4093 4545 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.04 -0.00 -0.06 0.01 -0.07 -0.05 -0.03 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.01 0.02 0.00 0.01 0.00 ]
C [ 0.00 0.02 0.02 -0.01 0.03 0.12 -0.03 0.13 0.18 0.11 0.13 0.19 0.02 -0.02 0.05 0.07 -0.04 -0.04 0.06 0.04 -0.00 0.02 0.01 0.02 ]
G [ 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.04 -0.05 -0.01 -0.08 -0.04 -0.02 0.05 0.12 -0.03 0.19 0.13 -0.02 0.04 0.05 0.02 0.01 0.01 ]
T [ 0.01 -0.02 0.02 -0.02 -0.03 0.01 -0.02 -0.06 -0.06 -0.07 0.03 -0.07 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages