Detailed information of deep learning profile BP000097.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000097.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DWE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.11 0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4545 4093 3852 5400 6870 5021 3979 4707 3841 4254 4831 5030 4930 5138 4547 3142 4533 5554 2138 945 11957 1682 3368 15814 346 6280 2039 565 1158 3871 6782 2400 3440 6550 3824 5546 4384 5095 4656 4480 5119 5859 4523 5084 5298 5284 5088 5280 5050 5075 ]
C [ 5003 3901 5304 6404 4504 4361 3837 5073 8272 7258 6398 5783 5642 5106 5684 6902 4760 2636 15442 18901 1585 10631 7893 609 157 255 979 402 1902 12907 2399 9847 6429 5087 4430 4278 4414 5489 6249 7078 6072 4753 5397 5083 4856 4977 5209 5156 5329 5238 ]
G [ 5317 6827 6920 4123 5046 5144 4791 4850 3647 3892 4685 4937 4956 4532 5199 3520 6757 8526 1697 444 3310 7450 2014 2488 19848 13655 11827 19047 15661 1635 9679 5534 2836 6084 5498 4883 7852 5611 5544 4002 4255 5513 5749 5650 5502 5184 5153 5480 5690 5491 ]
T [ 5724 5768 4513 4662 4169 6063 7982 5959 4829 5185 4675 4839 5061 5813 5159 7025 4539 3873 1312 299 3737 826 7314 1678 238 399 5744 575 1868 2176 1729 2808 7884 2868 6837 5882 3939 4394 4140 5029 5143 4464 4920 4772 4933 5144 5139 4673 4520 4785 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.07 0.03 -0.07 -0.06 -0.06 -0.02 0.01 -0.03 -0.02 0.02 -0.02 0.01 ]
C [ 0.01 0.01 0.02 0.05 0.04 -0.02 0.13 0.19 -0.03 0.12 0.05 -0.02 -0.04 -0.08 -0.01 -0.05 -0.04 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 ]
G [ 0.02 0.01 0.02 -0.00 0.04 0.06 -0.04 -0.04 0.07 0.05 -0.02 0.02 0.19 0.13 0.11 0.18 0.13 -0.03 0.12 0.03 -0.01 0.02 0.02 0.00 ]
T [ 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.03 -0.05 -0.07 0.01 -0.06 -0.00 -0.04 -0.06 -0.01 0.03 -0.04 0.02 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages