Detailed information of deep learning profile BP000096.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of villous mesenchyme using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000096.1
Cell line/tissue: fibroblast of villous mesenchyme
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.11 0.17 0.06 0.09 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.18 0.10 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4896 4597 4865 5261 5212 4930 4958 5037 4718 5219 5002 4446 4484 4043 5939 6753 3134 7923 2944 1843 2401 1927 799 5264 432 233 1640 7282 817 3812 321 1482 3915 4916 6930 5161 6312 5588 4838 4810 5186 5022 6034 8141 6188 4337 4781 4552 5797 5654 ]
C [ 5518 5676 5569 5128 5225 5535 5664 5636 5504 4349 4188 5585 5611 8029 4854 5605 6271 2984 5853 9665 1692 15733 18885 12085 13953 20211 2375 2044 7605 3668 434 1783 8501 6461 3393 5157 4430 4908 4979 4610 3982 3585 4934 4858 5112 5003 4122 6940 6814 5300 ]
G [ 5236 5276 5211 5186 5113 5008 5062 5457 4837 6134 7007 6111 5510 4346 4358 4560 4942 6384 9377 2374 12568 1964 547 1132 273 113 642 8153 10679 1607 18947 15343 2730 4919 7330 6041 4978 5474 5722 6511 7232 8426 5221 3895 4392 4652 6544 5436 4000 5146 ]
T [ 5268 5369 5273 5343 5368 5445 5234 4788 5859 5216 4721 4776 5313 4500 5767 4000 6571 3627 2744 7036 4257 1294 687 2437 6260 361 16261 3439 1817 11831 1216 2310 5772 4622 3265 4559 5198 4948 5379 4987 4518 3885 4729 4024 5226 6926 5471 3990 4307 4818 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.00 -0.04 0.01 -0.08 -0.04 -0.04 0.06 -0.07 -0.03 -0.09 -0.05 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.04 0.01 0.02 0.02 -0.01 0.04 0.13 -0.02 0.13 0.17 0.11 0.14 0.19 0.03 -0.03 0.05 0.07 -0.04 -0.03 0.06 0.04 -0.00 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.05 -0.01 -0.09 -0.04 -0.03 0.05 0.12 -0.03 0.19 0.13 -0.01 0.04 0.06 0.03 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.06 0.04 -0.06 0.10 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages