Detailed information of deep learning profile BP000096.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of villous mesenchyme using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000096.1
Cell line/tissue: fibroblast of villous mesenchyme
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.18 0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.09 0.06 0.17 0.11 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4818 4307 3990 5471 6926 5226 4024 4729 3885 4518 4987 5379 4948 5198 4559 3265 4622 5772 2310 1216 11831 1817 3439 16261 361 6260 2437 687 1294 4257 7036 2744 3627 6571 4000 5767 4500 5313 4776 4721 5216 5859 4788 5234 5445 5368 5343 5273 5369 5268 ]
C [ 5146 4000 5436 6544 4652 4392 3895 5221 8426 7232 6511 5722 5474 4978 6041 7330 4919 2730 15343 18947 1607 10679 8153 642 113 273 1132 547 1964 12568 2374 9377 6384 4942 4560 4358 4346 5510 6111 7007 6134 4837 5457 5062 5008 5113 5186 5211 5276 5236 ]
G [ 5300 6814 6940 4122 5003 5112 4858 4934 3585 3982 4610 4979 4908 4430 5157 3393 6461 8501 1783 434 3668 7605 2044 2375 20211 13953 12085 18885 15733 1692 9665 5853 2984 6271 5605 4854 8029 5611 5585 4188 4349 5504 5636 5664 5535 5225 5128 5569 5676 5518 ]
T [ 5654 5797 4552 4781 4337 6188 8141 6034 5022 5186 4810 4838 5588 6312 5161 6930 4916 3915 1482 321 3812 817 7282 1640 233 432 5264 799 1927 2401 1843 2944 7923 3134 6753 5939 4043 4484 4446 5002 5219 4718 5037 4958 4930 5212 5261 4865 4597 4896 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.10 -0.06 0.04 -0.06 -0.06 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.03 0.06 0.04 -0.01 0.13 0.19 -0.03 0.12 0.05 -0.03 -0.04 -0.09 -0.01 -0.05 -0.03 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 -0.00 0.04 0.06 -0.03 -0.04 0.07 0.05 -0.03 0.03 0.19 0.14 0.11 0.17 0.13 -0.02 0.13 0.04 -0.01 0.02 0.02 0.01 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.05 -0.09 -0.03 -0.07 0.06 -0.04 -0.04 -0.08 0.01 -0.04 0.00 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages