Detailed information of deep learning profile BP000095.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in endothelial cell of umbilical vein using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000095.1
Cell line/tissue: endothelial cell of umbilical vein
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.01 -0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 0.00 0.16 0.26 0.09 0.12 0.28 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.02 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.05 0.00 0.12 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.10 0.00 0.27 0.15 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.01 -0.00 -0.00 -0.01 0.02 -0.00 0.12 -0.01 -0.00 0.04 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4978 4769 4920 5627 5383 5197 5208 5234 4545 5333 5224 4430 4583 4063 6211 7305 2945 8596 2802 1594 2217 1866 469 6255 307 188 1530 7768 736 3381 268 1361 3912 4983 7599 5616 6281 5502 5072 4905 5610 5195 6241 8711 6454 4422 4923 4755 5922 6036 ]
C [ 5614 5601 5659 5074 5108 5438 5689 5706 5525 4173 4033 5540 5682 8207 4756 5533 6290 2759 5765 9784 1449 16603 19811 12070 13552 20596 2347 1946 7561 3355 425 1694 8888 6849 3357 5200 4455 4891 5079 4739 4003 3530 4856 4703 5057 4946 4072 7075 7085 5315 ]
G [ 5305 5425 5149 5039 4956 4876 5086 5627 4771 6416 7221 6287 5599 4360 4226 4449 5007 6400 10125 2224 13729 1768 401 988 264 104 608 8055 11268 1408 19661 15978 2558 4630 6915 5612 5025 5496 5745 6354 7214 8413 5177 3734 4341 4476 6569 5242 3966 5003 ]
T [ 5272 5374 5441 5429 5722 5658 5186 4602 6328 5247 4691 4912 5305 4539 5976 3882 6927 3414 2477 7567 3774 932 488 1856 7046 281 16684 3400 1604 13025 815 2136 5811 4707 3298 4741 5408 5280 5273 5171 4342 4031 4895 4021 5317 7325 5605 4097 4196 4815 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.04 0.00 -0.08 0.02 -0.11 -0.07 -0.06 0.09 -0.10 -0.05 -0.13 -0.07 -0.04 -0.02 0.03 0.00 0.01 0.00 ]
C [ 0.02 0.06 0.02 0.04 0.04 -0.01 0.07 0.18 -0.01 0.20 0.27 0.17 0.20 0.28 0.04 -0.02 0.08 0.11 -0.04 -0.04 0.09 0.06 0.00 0.03 0.02 0.02 ]
G [ 0.03 0.02 0.02 0.02 0.05 0.06 0.10 -0.01 0.18 -0.03 -0.04 0.01 -0.08 -0.03 -0.01 0.09 0.18 -0.02 0.29 0.19 -0.01 0.06 0.08 0.04 0.02 0.02 ]
T [ 0.00 -0.01 0.01 -0.03 0.03 -0.02 -0.03 0.02 -0.02 -0.09 -0.08 -0.10 0.06 -0.09 0.14 -0.03 -0.04 0.05 -0.06 -0.02 0.02 -0.03 -0.04 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 894

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages