Detailed information of deep learning profile BP000094.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in retinal pigment epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000094.1
Cell line/tissue: retinal pigment epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVI
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.14 0.06 0.08 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5300 4971 5191 5563 5452 5140 5231 5372 4985 5364 5310 4632 4760 4319 6231 7124 3568 8200 3355 2013 2535 1999 783 5529 500 291 1840 7726 944 4357 442 1455 4116 5233 7284 5594 6505 5602 5171 5185 5567 5128 6264 8476 6478 4698 5246 4908 6177 5985 ]
C [ 5774 5941 5851 5521 5664 5999 5934 6129 5855 4987 4703 6113 6033 8332 5401 6015 6639 3269 5909 10265 1986 16417 20194 12849 15018 21327 2792 2247 8138 3697 552 1977 9032 6882 3686 5583 4824 5245 5398 5009 4268 4022 5336 5076 5377 5309 4414 7229 7048 5679 ]
G [ 5620 5788 5563 5546 5403 5399 5383 5608 5294 6351 7091 6442 5666 4767 4738 4902 5220 6613 10056 2776 13026 2342 533 1107 315 156 692 8616 11110 1738 19777 16351 2902 5179 7647 6267 5369 6041 6043 6710 7671 8806 5510 4207 4827 5038 6792 5767 4429 5374 ]
T [ 5498 5492 5587 5562 5673 5654 5644 5083 6058 5490 5088 5005 5733 4774 5822 4151 6765 4110 2872 7138 4645 1434 682 2707 6359 418 16868 3603 2000 12400 1421 2409 6142 4898 3575 4748 5494 5304 5580 5288 4686 4236 5082 4433 5510 7147 5740 4288 4538 5154 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.05 -0.06 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.01 0.02 0.02 -0.00 0.03 0.10 -0.01 0.11 0.15 0.10 0.12 0.16 0.02 -0.02 0.04 0.06 -0.03 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.04 -0.01 -0.07 -0.03 -0.02 0.04 0.10 -0.02 0.16 0.11 -0.01 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.02 -0.01 -0.05 -0.05 -0.05 0.03 -0.05 0.09 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages