Detailed information of deep learning profile BP000093.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in kidney epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000093.1
Cell line/tissue: kidney epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.10 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.13 0.24 0.00 0.08 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.11 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.25 0.11 0.08 0.23 0.15 0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4821 4406 4110 5597 6970 5353 4131 4981 4137 4479 5008 5217 5200 5361 4585 3379 4663 5597 2312 1125 12230 1794 3413 16337 366 6641 2155 466 1012 3952 7226 2402 3476 6773 3922 5793 4425 5340 4742 4714 5304 6064 4777 5234 5503 5553 5334 5386 5313 5300 ]
C [ 5153 4217 5392 6376 4783 4523 4052 5103 8128 7204 6462 5870 5656 5098 5807 7174 4783 2856 15538 19258 1642 10528 8179 671 141 306 910 261 1795 13550 2153 10215 6497 5036 4648 4386 4451 5631 6341 7225 6240 4882 5491 5129 5047 5073 5194 5202 5423 5347 ]
G [ 5414 6861 6857 4334 4993 5123 5021 4985 3817 4132 4746 5157 5054 4685 5367 3591 6662 8777 1845 494 3472 8052 2190 2529 20489 13863 12122 20060 16622 1474 10218 5806 2747 6357 5617 4903 8324 5737 5740 4189 4445 5679 5884 5860 5694 5327 5297 5691 5729 5597 ]
T [ 5826 5730 4855 4907 4468 6215 8010 6145 5132 5399 4998 4970 5304 6070 5455 7070 5106 3984 1519 337 3870 840 7432 1677 218 404 6027 427 1785 2238 1617 2791 8494 3048 7027 6132 4014 4506 4391 5086 5225 4589 5062 4991 4970 5261 5389 4935 4749 4970 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.04 -0.03 0.02 -0.01 -0.04 0.05 -0.04 -0.03 0.12 -0.07 0.05 -0.09 -0.09 -0.07 -0.02 0.03 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.04 0.03 0.02 0.03 0.08 0.05 -0.01 0.17 0.25 -0.01 0.17 0.08 -0.02 -0.05 -0.09 -0.00 -0.04 -0.04 0.16 -0.02 0.09 0.06 0.04 0.02 0.01 0.02 0.03 ]
G [ 0.01 0.02 0.02 0.03 -0.00 0.06 0.08 -0.04 -0.04 0.08 0.07 -0.03 0.04 0.25 0.18 0.15 0.24 0.17 -0.02 0.16 0.06 -0.01 0.04 0.03 0.01 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.03 -0.01 -0.03 -0.06 -0.12 -0.04 -0.09 0.08 -0.05 -0.06 -0.10 0.03 -0.06 0.00 -0.04 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 424

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 178

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages