Detailed information of deep learning profile BP000093.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in kidney epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000093.1
Cell line/tissue: kidney epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DVH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 0.00 0.15 0.23 0.08 0.11 0.25 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.11 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.08 0.00 0.24 0.13 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.10 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4970 4749 4935 5389 5261 4970 4991 5062 4589 5225 5086 4391 4506 4014 6132 7027 3048 8494 2791 1617 2238 1785 427 6027 404 218 1677 7432 840 3870 337 1519 3984 5106 7070 5455 6070 5304 4970 4998 5399 5132 6145 8010 6215 4468 4907 4855 5730 5826 ]
C [ 5597 5729 5691 5297 5327 5694 5860 5884 5679 4445 4189 5740 5737 8324 4903 5617 6357 2747 5806 10218 1474 16622 20060 12122 13863 20489 2529 2190 8052 3472 494 1845 8777 6662 3591 5367 4685 5054 5157 4746 4132 3817 4985 5021 5123 4993 4334 6857 6861 5414 ]
G [ 5347 5423 5202 5194 5073 5047 5129 5491 4882 6240 7225 6341 5631 4451 4386 4648 5036 6497 10215 2153 13550 1795 261 910 306 141 671 8179 10528 1642 19258 15538 2856 4783 7174 5807 5098 5656 5870 6462 7204 8128 5103 4052 4523 4783 6376 5392 4217 5153 ]
T [ 5300 5313 5386 5334 5553 5503 5234 4777 6064 5304 4714 4742 5340 4425 5793 3922 6773 3476 2402 7226 3952 1012 466 2155 6641 366 16337 3413 1794 12230 1125 2312 5597 4663 3379 4585 5361 5200 5217 5008 4479 4137 4981 4131 5353 6970 5597 4110 4406 4821 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.04 0.00 -0.06 0.03 -0.10 -0.06 -0.05 0.08 -0.09 -0.04 -0.12 -0.06 -0.03 -0.01 0.03 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.01 0.06 0.16 -0.02 0.17 0.24 0.15 0.18 0.25 0.04 -0.03 0.07 0.08 -0.04 -0.04 0.08 0.06 -0.00 0.03 0.02 0.02 0.01 ]
G [ 0.03 0.02 0.01 0.02 0.04 0.06 0.09 -0.02 0.16 -0.04 -0.04 -0.00 -0.09 -0.05 -0.02 0.08 0.17 -0.01 0.25 0.17 -0.01 0.05 0.08 0.03 0.02 0.03 0.04 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.03 -0.02 -0.07 -0.09 -0.09 0.05 -0.07 0.12 -0.03 -0.04 0.05 -0.04 -0.01 0.02 -0.03 -0.04 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 424

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 178

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages