Detailed information of deep learning profile BP000090.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in fibroblast of mammary gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000090.1
Cell line/tissue: fibroblast of mammary gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.01 0.00 0.00 -0.00 -0.00 0.03 0.00 ]
C [ 0.32 0.12 0.14 0.34 0.00 0.00 0.01 0.01 0.00 -0.01 0.04 0.02 -0.00 -0.00 ]
G [ 0.01 0.01 0.00 0.01 0.00 0.06 0.10 0.00 0.33 0.20 -0.00 0.00 0.03 0.00 ]
T [ 0.00 0.00 0.02 0.00 0.20 -0.01 -0.00 0.07 0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 0 10 0 0 2 9 3 4 0 0 6 6 26 12 16 8 5 2 9 3 13 4 7 6 6 7 10 8 7 6 4 6 8 8 6 10 8 10 8 7 11 11 7 10 9 11 12 8 7 6 ]
C [ 48 36 31 48 1 2 18 6 0 3 27 29 1 11 12 24 34 34 33 34 23 22 31 30 32 24 20 23 26 32 28 29 20 21 23 18 20 19 20 20 19 16 18 15 17 22 17 18 21 18 ]
G [ 1 3 1 1 1 33 25 3 46 44 3 7 19 21 10 8 6 3 1 4 5 11 6 3 2 5 10 9 7 5 6 9 9 13 11 10 13 8 14 12 14 10 15 11 12 4 10 9 9 14 ]
T [ 0 0 17 0 45 5 3 36 3 2 13 7 3 5 11 9 4 10 6 8 8 12 5 10 9 13 9 9 9 6 11 5 12 7 9 11 8 12 7 10 5 12 9 13 11 12 10 14 12 11 ]

Hypothetical CWM

   
A [ -0.10 0.06 -0.14 -0.08 -0.02 0.16 -0.11 -0.02 -0.15 -0.07 -0.02 -0.00 0.06 0.03 ]
C [ 0.32 0.17 0.22 0.33 0.02 -0.06 0.06 0.10 -0.09 -0.09 0.08 0.04 -0.02 0.01 ]
G [ -0.12 -0.02 -0.17 -0.09 -0.04 0.09 0.21 -0.05 0.34 0.22 -0.02 0.06 0.09 0.03 ]
T [ -0.15 -0.12 0.11 -0.13 0.21 -0.01 -0.07 0.09 -0.06 -0.01 0.05 -0.02 -0.03 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 20938

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages