Detailed information of deep learning profile BP000089.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in mammary epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000089.1
Cell line/tissue: mammary epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.05 0.17 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5392 4849 4666 6121 7659 5868 4643 5379 4519 5017 5653 5821 5605 5747 5134 3638 5438 6423 2651 1463 13080 2082 4020 17225 466 7114 2769 805 1468 4699 8092 2850 4154 7322 4488 6350 5098 5808 5378 5245 5840 6811 5218 5898 6096 6228 6100 5973 5905 5868 ]
C [ 5631 4486 5862 6984 5177 5041 4311 5727 9032 7851 6861 6215 5977 5573 6370 7892 5427 3056 16691 20679 1691 11604 8507 842 217 460 1338 510 2220 13844 2543 10299 6973 5562 5005 4725 4638 5939 6903 7802 6703 5171 5951 5549 5480 5458 5483 5620 5652 5648 ]
G [ 5653 7302 7438 4556 5348 5350 5220 5349 4036 4441 5068 5551 5416 4921 5653 3763 6684 9216 2087 508 3854 8403 2464 3009 22092 14984 11975 20887 17161 1855 10385 6492 3387 6716 6112 5412 8596 6298 5953 4421 4691 6116 6364 6118 6005 5657 5594 6072 6213 5966 ]
T [ 6410 6449 5120 5425 4902 6827 8912 6631 5499 5777 5504 5499 6088 6845 5929 7793 5537 4391 1657 436 4461 997 8095 2010 311 528 7004 884 2237 2688 2066 3445 8572 3486 7481 6599 4754 5041 4852 5618 5852 4988 5553 5521 5505 5743 5909 5421 5316 5604 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.10 -0.06 0.04 -0.06 -0.06 -0.05 -0.01 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.01 0.01 0.03 0.05 0.03 -0.01 0.13 0.20 -0.02 0.12 0.05 -0.01 -0.03 -0.07 -0.01 -0.04 -0.03 0.12 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.03 -0.04 0.07 0.05 -0.02 0.03 0.19 0.14 0.10 0.18 0.13 -0.02 0.12 0.04 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.09 -0.02 -0.07 0.06 -0.03 -0.05 -0.07 0.02 -0.04 0.00 -0.03 -0.05 -0.02 0.02 -0.04 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 207

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages