Detailed information of deep learning profile BP000089.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in mammary epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000089.1
Cell line/tissue: mammary epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.17 0.05 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5604 5316 5421 5909 5743 5505 5521 5553 4988 5852 5618 4852 5041 4754 6599 7481 3486 8572 3445 2066 2688 2237 884 7004 528 311 2010 8095 997 4461 436 1657 4391 5537 7793 5929 6845 6088 5499 5504 5777 5499 6631 8912 6827 4902 5425 5120 6449 6410 ]
C [ 5966 6213 6072 5594 5657 6005 6118 6364 6116 4691 4421 5953 6298 8596 5412 6112 6716 3387 6492 10385 1855 17161 20887 11975 14984 22092 3009 2464 8403 3854 508 2087 9216 6684 3763 5653 4921 5416 5551 5068 4441 4036 5349 5220 5350 5348 4556 7438 7302 5653 ]
G [ 5648 5652 5620 5483 5458 5480 5549 5951 5171 6703 7802 6903 5939 4638 4725 5005 5562 6973 10299 2543 13844 2220 510 1338 460 217 842 8507 11604 1691 20679 16691 3056 5427 7892 6370 5573 5977 6215 6861 7851 9032 5727 4311 5041 5177 6984 5862 4486 5631 ]
T [ 5868 5905 5973 6100 6228 6096 5898 5218 6811 5840 5245 5378 5808 5098 6350 4488 7322 4154 2850 8092 4699 1468 805 2769 7114 466 17225 4020 2082 13080 1463 2651 6423 5438 3638 5134 5747 5605 5821 5653 5017 4519 5379 4643 5868 7659 6121 4666 4849 5392 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.04 0.02 -0.02 -0.05 -0.03 0.00 -0.04 0.02 -0.07 -0.05 -0.03 0.06 -0.07 -0.02 -0.09 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.04 0.12 -0.02 0.13 0.18 0.10 0.14 0.19 0.03 -0.02 0.05 0.07 -0.04 -0.03 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.12 -0.03 -0.04 -0.01 -0.07 -0.03 -0.01 0.05 0.12 -0.02 0.20 0.13 -0.01 0.03 0.05 0.03 0.01 0.01 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.01 -0.05 -0.06 -0.06 0.04 -0.06 0.10 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 207

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages