Detailed information of deep learning profile BP000088.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HL-60 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000088.1
Cell line/tissue: HL-60
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUP
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.08 -0.00 0.14 0.21 0.07 0.09 0.22 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.03 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.12 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.08 -0.00 0.22 0.12 -0.00 0.01 0.02 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.10 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4515 4264 4353 5385 5173 4838 4798 4851 3966 5013 4774 3772 3907 3419 5782 6940 2147 8253 1933 962 1730 1550 248 6791 174 127 1056 7647 556 2525 188 1302 3498 4688 7681 5268 5958 4969 4378 4290 5238 4918 6027 8781 6441 3817 4492 4339 5485 5729 ]
C [ 4919 4988 5305 4253 4121 4842 5141 4960 4999 2884 2650 4650 4944 8185 3997 5033 5467 1874 5470 9256 755 16135 18465 10774 11388 18689 1503 1313 6344 2315 185 1220 8310 6457 2717 4691 3855 4122 4301 4141 3314 2871 4187 4076 4383 4522 3285 6559 6817 4734 ]
G [ 4809 4839 4554 4379 4217 4253 4371 5252 3905 6147 7607 6248 5243 3290 3502 3691 4568 6270 9805 1108 13824 903 119 532 116 75 449 7184 11039 957 18343 14780 1953 3822 6116 4697 4275 4912 5561 5952 6651 7853 4484 2864 3485 3796 6042 4774 3160 4476 ]
T [ 4877 5029 4908 5103 5609 5187 4810 4057 6250 5076 4089 4450 5026 4226 5839 3456 6938 2723 1912 7794 2811 532 288 1023 7442 229 16112 2976 1181 13323 404 1818 5359 4153 2606 4464 5032 5117 4880 4737 3917 3478 4422 3399 4811 6985 5301 3448 3658 4181 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.08 -0.04 0.00 -0.06 0.02 -0.09 -0.06 -0.06 0.07 -0.09 -0.05 -0.10 -0.06 -0.03 -0.01 0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.05 0.01 0.03 0.04 -0.01 0.05 0.17 -0.03 0.16 0.22 0.14 0.17 0.23 0.04 -0.02 0.07 0.10 -0.02 -0.02 0.08 0.06 0.01 0.03 0.02 0.03 0.02 ]
G [ 0.03 0.02 0.02 0.02 0.04 0.05 0.09 -0.02 0.17 -0.02 -0.02 0.01 -0.09 -0.01 -0.01 0.06 0.14 -0.04 0.23 0.15 -0.01 0.05 0.07 0.03 0.02 0.03 0.04 ]
T [ 0.00 -0.01 0.01 -0.03 0.03 -0.03 -0.04 0.02 -0.03 -0.07 -0.08 -0.08 0.06 -0.09 0.11 -0.03 -0.04 0.05 -0.05 -0.01 0.02 -0.02 -0.04 -0.01 -0.00 -0.00 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages