Detailed information of deep learning profile BP000088.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HL-60 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000088.1
Cell line/tissue: HL-60
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUP
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.10 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.22 -0.00 0.08 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.12 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.03 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.22 0.09 0.07 0.21 0.14 -0.00 0.08 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4181 3658 3448 5301 6985 4811 3399 4422 3478 3917 4737 4880 5117 5032 4464 2606 4153 5359 1818 404 13323 1181 2976 16112 229 7442 1023 288 532 2811 7794 1912 2723 6938 3456 5839 4226 5026 4450 4089 5076 6250 4057 4810 5187 5609 5103 4908 5029 4877 ]
C [ 4476 3160 4774 6042 3796 3485 2864 4484 7853 6651 5952 5561 4912 4275 4697 6116 3822 1953 14780 18343 957 11039 7184 449 75 116 532 119 903 13824 1108 9805 6270 4568 3691 3502 3290 5243 6248 7607 6147 3905 5252 4371 4253 4217 4379 4554 4839 4809 ]
G [ 4734 6817 6559 3285 4522 4383 4076 4187 2871 3314 4141 4301 4122 3855 4691 2717 6457 8310 1220 185 2315 6344 1313 1503 18689 11388 10774 18465 16135 755 9256 5470 1874 5467 5033 3997 8185 4944 4650 2650 2884 4999 4960 5141 4842 4121 4253 5305 4988 4919 ]
T [ 5729 5485 4339 4492 3817 6441 8781 6027 4918 5238 4290 4378 4969 5958 5268 7681 4688 3498 1302 188 2525 556 7647 1056 127 174 6791 248 1550 1730 962 1933 8253 2147 6940 5782 3419 3907 3772 4774 5013 3966 4851 4798 4838 5173 5385 4353 4264 4515 ]

Hypothetical CWM

   
A [ -0.01 -0.00 -0.00 -0.01 -0.04 -0.02 0.02 -0.01 -0.05 0.05 -0.04 -0.03 0.11 -0.09 0.06 -0.08 -0.08 -0.07 -0.03 0.02 -0.04 -0.03 0.03 -0.03 0.01 -0.01 0.00 ]
C [ 0.04 0.03 0.02 0.03 0.07 0.05 -0.01 0.15 0.23 -0.04 0.14 0.06 -0.01 -0.01 -0.09 0.01 -0.02 -0.02 0.17 -0.02 0.09 0.05 0.04 0.02 0.02 0.02 0.03 ]
G [ 0.02 0.03 0.02 0.03 0.01 0.06 0.08 -0.02 -0.02 0.10 0.07 -0.02 0.04 0.23 0.17 0.14 0.22 0.16 -0.03 0.17 0.05 -0.01 0.04 0.03 0.01 0.05 0.01 ]
T [ -0.00 -0.00 0.01 0.01 0.02 -0.01 -0.03 -0.06 -0.10 -0.05 -0.09 0.07 -0.06 -0.06 -0.09 0.02 -0.06 0.00 -0.04 -0.08 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages