Detailed information of deep learning profile BP000087.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HFF-Myc using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000087.1
Cell line/tissue: HFF-Myc
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUM
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.08 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.10 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.17 0.11 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4458 3998 3806 5251 6452 4717 3707 4323 3690 4070 4639 4874 4805 4820 4248 3092 4275 5353 2061 929 11707 1563 3117 15347 272 6325 1875 423 950 3673 6930 2249 3127 6371 3606 5392 4237 5002 4461 4338 4776 5692 4351 4848 5087 5189 4941 4932 4922 4868 ]
C [ 4411 3597 4861 5703 4153 3975 3491 4676 7442 6451 5811 5327 5011 4469 5180 6344 4392 2321 14295 17609 1290 10003 7416 476 85 182 753 266 1465 12274 1856 9126 5817 4489 3922 3824 3834 5017 5617 6533 5731 4341 4934 4576 4381 4473 4611 4647 4764 4781 ]
G [ 4825 6264 6137 3733 4441 4474 4297 4461 3253 3596 4278 4452 4303 4031 4689 3039 5923 7790 1530 317 2797 6860 1626 1974 18633 12377 11059 18038 15075 1263 8842 5275 2421 5605 4950 4341 7347 5056 5039 3597 3824 4916 5084 5004 5015 4608 4575 5134 5059 4934 ]
T [ 5459 5294 4349 4466 4107 5987 7658 5693 4768 5036 4425 4500 5034 5833 5036 6678 4563 3689 1267 298 3359 727 6994 1356 163 269 5466 426 1663 1943 1525 2503 7788 2688 6675 5596 3735 4078 4036 4685 4822 4204 4784 4725 4670 4883 5026 4440 4408 4570 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.04 0.04 -0.03 -0.02 0.10 -0.07 0.04 -0.07 -0.06 -0.05 -0.02 0.02 -0.03 -0.02 0.02 -0.03 0.01 -0.01 0.00 ]
C [ 0.02 0.02 0.03 0.06 0.04 -0.01 0.13 0.19 -0.03 0.12 0.06 -0.01 -0.02 -0.07 -0.01 -0.04 -0.02 0.12 -0.01 0.07 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.02 0.02 0.02 0.00 0.05 0.06 -0.03 -0.03 0.07 0.05 -0.01 0.03 0.19 0.13 0.11 0.18 0.13 -0.02 0.13 0.04 -0.01 0.03 0.03 0.01 0.04 0.02 ]
T [ -0.00 0.01 0.00 0.01 -0.01 -0.02 -0.04 -0.09 -0.03 -0.07 0.06 -0.04 -0.05 -0.08 0.01 -0.05 -0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages