Detailed information of deep learning profile BP000087.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HFF-Myc using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000087.1
Cell line/tissue: HFF-Myc
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUM
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.11 0.17 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.10 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4570 4408 4440 5026 4883 4670 4725 4784 4204 4822 4685 4036 4078 3735 5596 6675 2688 7788 2503 1525 1943 1663 426 5466 269 163 1356 6994 727 3359 298 1267 3689 4563 6678 5036 5833 5034 4500 4425 5036 4768 5693 7658 5987 4107 4466 4349 5294 5459 ]
C [ 4934 5059 5134 4575 4608 5015 5004 5084 4916 3824 3597 5039 5056 7347 4341 4950 5605 2421 5275 8842 1263 15075 18038 11059 12377 18633 1974 1626 6860 2797 317 1530 7790 5923 3039 4689 4031 4303 4452 4278 3596 3253 4461 4297 4474 4441 3733 6137 6264 4825 ]
G [ 4781 4764 4647 4611 4473 4381 4576 4934 4341 5731 6533 5617 5017 3834 3824 3922 4489 5817 9126 1856 12274 1465 266 753 182 85 476 7416 10003 1290 17609 14295 2321 4392 6344 5180 4469 5011 5327 5811 6451 7442 4676 3491 3975 4153 5703 4861 3597 4411 ]
T [ 4868 4922 4932 4941 5189 5087 4848 4351 5692 4776 4338 4461 5002 4237 5392 3606 6371 3127 2249 6930 3673 950 423 1875 6325 272 15347 3117 1563 11707 929 2061 5353 4275 3092 4248 4820 4805 4874 4639 4070 3690 4323 3707 4717 6452 5251 3806 3998 4458 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 -0.00 -0.05 0.01 -0.08 -0.05 -0.04 0.06 -0.07 -0.03 -0.09 -0.04 -0.02 -0.01 0.01 0.00 0.01 -0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.01 0.04 0.13 -0.02 0.13 0.18 0.11 0.13 0.19 0.03 -0.01 0.05 0.07 -0.03 -0.03 0.06 0.05 0.00 0.02 0.02 0.02 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.01 0.12 -0.02 -0.04 -0.01 -0.07 -0.02 -0.01 0.06 0.12 -0.03 0.19 0.13 -0.01 0.04 0.06 0.03 0.02 0.02 ]
T [ 0.00 -0.01 0.01 -0.03 0.02 -0.02 -0.03 0.02 -0.02 -0.05 -0.06 -0.07 0.04 -0.07 0.10 -0.02 -0.03 0.04 -0.04 -0.02 0.02 -0.02 -0.03 -0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages