Detailed information of deep learning profile BP000086.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin fibroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000086.1
Cell line/tissue: foreskin fibroblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.04 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 ]
C [ 0.27 0.09 0.13 0.29 0.00 -0.00 0.01 0.02 -0.00 -0.01 0.03 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 -0.00 0.04 0.10 0.00 0.27 0.15 -0.01 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.02 0.00 0.20 -0.00 0.00 0.06 -0.00 0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1 7 0 0 1 7 0 2 1 2 2 2 12 4 6 2 3 3 5 2 9 1 5 2 7 3 5 5 3 2 2 2 4 1 1 6 7 5 6 4 10 4 3 5 9 7 5 2 3 4 ]
C [ 21 14 16 22 0 1 9 5 1 3 14 11 3 7 9 14 19 16 13 17 10 11 14 16 15 13 5 7 11 12 13 18 11 11 12 9 6 13 9 10 7 8 7 10 7 8 7 7 10 10 ]
G [ 1 2 0 1 1 14 14 1 20 18 3 5 8 10 2 2 1 1 1 2 3 2 2 1 1 2 6 8 4 4 2 1 0 5 5 5 6 2 3 6 3 5 8 4 4 3 7 5 6 3 ]
T [ 0 0 7 0 21 1 0 15 1 0 4 5 0 2 6 5 0 3 4 2 1 9 2 4 0 5 7 3 5 5 6 2 8 6 5 3 4 3 5 3 3 6 5 4 3 5 4 9 4 6 ]

Hypothetical CWM

   
A [ -0.09 0.03 -0.12 -0.09 -0.04 0.13 -0.13 -0.02 -0.16 -0.06 -0.02 -0.01 0.05 0.02 0.03 0.02 0.01 ]
C [ 0.27 0.15 0.20 0.30 0.03 -0.04 0.06 0.11 -0.10 -0.09 0.06 0.03 -0.03 0.02 -0.00 -0.01 -0.03 ]
G [ -0.12 -0.03 -0.15 -0.10 -0.03 0.07 0.17 -0.07 0.29 0.18 -0.03 0.05 0.09 0.02 0.02 0.04 0.06 ]
T [ -0.12 -0.10 0.10 -0.13 0.20 -0.02 -0.05 0.08 -0.07 -0.01 0.04 -0.02 -0.04 0.00 0.03 0.02 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19624

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 533

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000202.1 CTCF ENCSR260FAS neural progenitor cell Homo sapiens MA0139.2
BP000203.1 CTCF ENCSR261VAS smooth muscle cell Homo sapiens MA0139.2
BP000204.1 CTCF ENCSR265ARE VCaP Homo sapiens MA0139.2
BP000205.1 CTCF ENCSR265PFQ body of pancreas Homo sapiens MA0139.2
BP000206.1 CTCF ENCSR266CJT spleen Homo sapiens MA0139.2
BP000207.1 CTCF ENCSR266UTR esophagus squamous epithelium Homo sapiens MA0139.2
BP000208.1 CTCF ENCSR266ZUX nephron Homo sapiens MA0139.2
BP000209.1 CTCF ENCSR270KFY middle frontal area 46 Homo sapiens MA0139.2
BP000210.1 CTCF ENCSR275JVX middle frontal area 46 Homo sapiens MA0139.2
BP000211.1 CTCF ENCSR287UXS A549 Homo sapiens MA0139.2
Showing 10 profiles of page 21 from 45 pages