Detailed information of deep learning profile BP000086.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin fibroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000086.1
Cell line/tissue: foreskin fibroblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 0.00 -0.00 0.04 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 0.00 ]
C [ 0.27 0.09 0.13 0.29 0.00 -0.00 0.01 0.02 -0.00 -0.01 0.03 0.01 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 -0.00 0.04 0.10 0.00 0.27 0.15 -0.01 0.01 0.02 0.01 ]
T [ 0.00 0.00 0.02 0.00 0.20 -0.00 0.00 0.06 -0.00 0.00 0.01 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1 7 0 0 1 7 0 2 1 2 2 2 12 4 6 2 3 3 5 2 9 1 5 2 7 3 5 5 3 2 2 2 4 1 1 6 7 5 6 4 10 4 3 5 9 7 5 2 3 4 ]
C [ 21 14 16 22 0 1 9 5 1 3 14 11 3 7 9 14 19 16 13 17 10 11 14 16 15 13 5 7 11 12 13 18 11 11 12 9 6 13 9 10 7 8 7 10 7 8 7 7 10 10 ]
G [ 1 2 0 1 1 14 14 1 20 18 3 5 8 10 2 2 1 1 1 2 3 2 2 1 1 2 6 8 4 4 2 1 0 5 5 5 6 2 3 6 3 5 8 4 4 3 7 5 6 3 ]
T [ 0 0 7 0 21 1 0 15 1 0 4 5 0 2 6 5 0 3 4 2 1 9 2 4 0 5 7 3 5 5 6 2 8 6 5 3 4 3 5 3 3 6 5 4 3 5 4 9 4 6 ]

Hypothetical CWM

   
A [ -0.09 0.03 -0.12 -0.09 -0.04 0.13 -0.13 -0.02 -0.16 -0.06 -0.02 -0.01 0.05 0.02 0.03 0.02 0.01 ]
C [ 0.27 0.15 0.20 0.30 0.03 -0.04 0.06 0.11 -0.10 -0.09 0.06 0.03 -0.03 0.02 -0.00 -0.01 -0.03 ]
G [ -0.12 -0.03 -0.15 -0.10 -0.03 0.07 0.17 -0.07 0.29 0.18 -0.03 0.05 0.09 0.02 0.02 0.04 0.06 ]
T [ -0.12 -0.10 0.10 -0.13 0.20 -0.02 -0.05 0.08 -0.07 -0.01 0.04 -0.02 -0.04 0.00 0.03 0.02 0.02 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19624

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 533

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages