Detailed information of deep learning profile BP000085.1

  1. Home
  2. Deep Learning Profile > BP000085.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000085.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.17 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.16 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4535 4114 3887 5299 6585 4944 3853 4574 3801 4149 4813 5015 4887 5075 4408 3181 4403 5476 2131 1015 11572 1757 3189 15330 348 5748 2223 602 1338 4062 6655 2607 3597 6148 3836 5334 4293 5135 4489 4560 4950 5494 4649 4917 5147 5048 5007 5095 4866 4959 ]
C [ 4850 3756 5203 6321 4625 4337 3965 5130 8179 7300 6275 5609 5514 4944 5705 6941 4673 2709 15152 18389 1600 10193 7872 586 141 258 955 535 2295 12146 2724 9134 6195 4821 4654 4370 4590 5226 6018 6683 5862 5011 5365 5079 4981 5158 5261 5111 5298 5185 ]
G [ 5366 6828 6785 4116 4927 5054 4848 4825 3591 3930 4620 5072 4950 4543 5095 3380 6459 8366 1690 504 3050 7495 2102 2574 19523 13780 11441 18402 14630 1823 8988 5533 3085 6115 5510 4904 7570 5536 5669 4335 4547 5442 5474 5491 5479 5195 5104 5554 5624 5384 ]
T [ 5518 5571 4394 4533 4132 5934 7603 5740 4698 4890 4561 4573 4918 5707 5061 6767 4734 3718 1296 361 4047 824 7106 1778 257 483 5650 730 2006 2238 1902 2995 7392 3185 6269 5661 3816 4372 4093 4691 4910 4322 4781 4782 4662 4868 4897 4509 4481 4741 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.01 -0.03 -0.02 0.02 -0.01 -0.04 0.03 -0.02 -0.02 0.09 -0.06 0.03 -0.06 -0.07 -0.06 -0.02 0.01 -0.03 -0.02 0.02 -0.02 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.12 0.18 -0.02 0.11 0.05 -0.01 -0.03 -0.07 -0.01 -0.05 -0.03 0.10 -0.01 0.06 0.03 0.03 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.04 0.05 -0.04 -0.04 0.06 0.04 -0.02 0.03 0.18 0.13 0.10 0.16 0.11 -0.01 0.11 0.04 -0.01 0.02 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.05 -0.09 -0.02 -0.06 0.06 -0.03 -0.05 -0.07 0.01 -0.04 -0.01 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages