Detailed information of deep learning profile BP000085.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000085.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUG
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.16 0.06 0.08 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.17 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4741 4481 4509 4897 4868 4662 4782 4781 4322 4910 4691 4093 4372 3816 5661 6269 3185 7392 2995 1902 2238 2006 730 5650 483 257 1778 7106 824 4047 361 1296 3718 4734 6767 5061 5707 4918 4573 4561 4890 4698 5740 7603 5934 4132 4533 4394 5571 5518 ]
C [ 5384 5624 5554 5104 5195 5479 5491 5474 5442 4547 4335 5669 5536 7570 4904 5510 6115 3085 5533 8988 1823 14630 18402 11441 13780 19523 2574 2102 7495 3050 504 1690 8366 6459 3380 5095 4543 4950 5072 4620 3930 3591 4825 4848 5054 4927 4116 6785 6828 5366 ]
G [ 5185 5298 5111 5261 5158 4981 5079 5365 5011 5862 6683 6018 5226 4590 4370 4654 4821 6195 9134 2724 12146 2295 535 955 258 141 586 7872 10193 1600 18389 15152 2709 4673 6941 5705 4944 5514 5609 6275 7300 8179 5130 3965 4337 4625 6321 5203 3756 4850 ]
T [ 4959 4866 5095 5007 5048 5147 4917 4649 5494 4950 4560 4489 5135 4293 5334 3836 6148 3597 2607 6655 4062 1338 602 2223 5748 348 15330 3189 1757 11572 1015 2131 5476 4403 3181 4408 5075 4887 5015 4813 4149 3801 4574 3853 4944 6585 5299 3887 4114 4535 ]

Hypothetical CWM

   
A [ 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.01 -0.04 0.01 -0.07 -0.05 -0.03 0.06 -0.06 -0.02 -0.09 -0.05 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.02 -0.01 0.04 0.11 -0.01 0.11 0.16 0.10 0.13 0.18 0.03 -0.02 0.04 0.06 -0.04 -0.04 0.05 0.04 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.03 0.03 0.06 -0.01 0.10 -0.03 -0.05 -0.01 -0.07 -0.03 -0.01 0.05 0.11 -0.02 0.18 0.12 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.02 0.02 -0.02 -0.03 0.01 -0.02 -0.06 -0.07 -0.06 0.03 -0.06 0.09 -0.02 -0.02 0.03 -0.04 -0.01 0.02 -0.02 -0.03 -0.01 -0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages