Detailed information of deep learning profile BP000084.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000084.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.12 0.22 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.22 0.09 0.07 0.20 0.12 0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4532 3986 3796 5489 6924 5021 3806 4688 3575 4268 4923 4988 4944 5078 4534 3139 4400 5603 1973 871 12456 1622 3275 15540 284 6599 1983 488 1064 3713 7280 2368 3267 6561 3750 5566 4401 5197 4591 4560 5107 6042 4466 5057 5273 5410 5264 5226 5166 5133 ]
C [ 4514 3552 5012 5932 4140 3962 3374 4798 8031 6799 5927 5386 5123 4688 5390 6463 4312 2351 15076 18279 1398 10415 7192 477 116 191 728 388 1788 12464 2135 9242 5899 4608 4039 3896 3856 5099 5832 6612 5723 4441 5210 4625 4495 4551 4561 4801 4852 4835 ]
G [ 4941 6642 6473 3661 4557 4571 4398 4410 3271 3525 4342 4594 4483 3973 4620 3028 6232 7951 1445 355 2321 7043 1696 2301 19176 12607 11081 18364 15096 1370 8713 5527 2549 5757 5170 4489 7666 5180 5271 3617 3949 5001 5210 5212 5202 4747 4812 5186 5203 5132 ]
T [ 5800 5607 4506 4705 4166 6233 8209 5891 4910 5195 4595 4819 5237 6048 5243 7157 4843 3882 1293 282 3612 707 7624 1469 211 390 5995 547 1839 2240 1659 2650 8072 2861 6828 5836 3864 4311 4093 4998 5008 4303 4901 4893 4817 5079 5150 4574 4566 4687 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.03 -0.02 0.02 -0.02 -0.05 0.05 -0.03 -0.03 0.11 -0.08 0.04 -0.07 -0.07 -0.06 -0.02 0.02 -0.03 -0.03 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.02 0.15 0.23 -0.03 0.14 0.07 -0.02 -0.03 -0.08 -0.01 -0.05 -0.03 0.14 -0.02 0.07 0.05 0.04 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.05 0.06 -0.04 -0.04 0.07 0.06 -0.02 0.03 0.23 0.16 0.13 0.21 0.15 -0.02 0.15 0.05 -0.00 0.04 0.03 0.01 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.10 -0.03 -0.08 0.08 -0.04 -0.05 -0.08 0.02 -0.06 -0.00 -0.03 -0.07 -0.02 0.03 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 121

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages