Detailed information of deep learning profile BP000084.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000084.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DUB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 0.00 0.12 0.20 0.07 0.09 0.22 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.22 0.12 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4687 4566 4574 5150 5079 4817 4893 4901 4303 5008 4998 4093 4311 3864 5836 6828 2861 8072 2650 1659 2240 1839 547 5995 390 211 1469 7624 707 3612 282 1293 3882 4843 7157 5243 6048 5237 4819 4595 5195 4910 5891 8209 6233 4166 4705 4506 5607 5800 ]
C [ 5132 5203 5186 4812 4747 5202 5212 5210 5001 3949 3617 5271 5180 7666 4489 5170 5757 2549 5527 8713 1370 15096 18364 11081 12607 19176 2301 1696 7043 2321 355 1445 7951 6232 3028 4620 3973 4483 4594 4342 3525 3271 4410 4398 4571 4557 3661 6473 6642 4941 ]
G [ 4835 4852 4801 4561 4551 4495 4625 5210 4441 5723 6612 5832 5099 3856 3896 4039 4608 5899 9242 2135 12464 1788 388 728 191 116 477 7192 10415 1398 18279 15076 2351 4312 6463 5390 4688 5123 5386 5927 6799 8031 4798 3374 3962 4140 5932 5012 3552 4514 ]
T [ 5133 5166 5226 5264 5410 5273 5057 4466 6042 5107 4560 4591 5197 4401 5566 3750 6561 3267 2368 7280 3713 1064 488 1983 6599 284 15540 3275 1622 12456 871 1973 5603 4400 3139 4534 5078 4944 4988 4923 4268 3575 4688 3806 5021 6924 5489 3796 3986 4532 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.02 -0.07 -0.03 -0.00 -0.06 0.02 -0.08 -0.05 -0.04 0.08 -0.08 -0.03 -0.10 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.01 0.03 0.04 -0.00 0.05 0.15 -0.02 0.15 0.21 0.13 0.16 0.23 0.03 -0.02 0.06 0.07 -0.04 -0.04 0.06 0.05 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.04 0.05 0.07 -0.02 0.14 -0.03 -0.05 -0.01 -0.08 -0.03 -0.02 0.07 0.14 -0.03 0.23 0.15 -0.02 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.02 -0.02 -0.06 -0.07 -0.07 0.04 -0.08 0.11 -0.03 -0.03 0.05 -0.05 -0.02 0.02 -0.02 -0.03 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 121

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages