Detailed information of deep learning profile BP000083.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000083.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.01 -0.00 0.01 0.05 0.00 0.11 0.19 0.08 0.10 0.22 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 0.00 0.22 0.13 -0.00 0.01 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4808 4531 4707 4982 5008 4731 4855 4929 4425 4923 4770 4241 4329 3958 5625 6452 3161 7454 3050 2007 2418 1991 692 5258 388 198 1475 7398 744 3879 305 1262 3820 4672 6960 5283 5884 5041 4709 4683 5079 4789 5752 7905 6040 4045 4653 4334 5486 5668 ]
C [ 5119 5214 5203 4823 4833 5116 5127 5197 5128 4332 4119 5323 5184 7218 4657 5291 5769 3025 5459 8556 1862 14146 17981 11497 13470 19239 2356 1687 7122 2580 399 1452 7794 6111 3117 4806 4157 4566 4637 4338 3582 3349 4557 4411 4665 4635 3767 6544 6620 5020 ]
G [ 4981 5024 4848 4940 4807 4784 4841 5104 4648 5610 6294 5623 5193 4318 4133 4290 4578 5720 8523 2636 11449 2188 510 760 190 79 460 7581 10268 1313 18090 15181 2445 4679 6606 5422 4754 5232 5409 5985 6958 8012 4858 3555 4069 4453 5966 5133 3548 4554 ]
T [ 4876 5015 5026 5039 5136 5153 4961 4554 5583 4919 4601 4597 5078 4290 5369 3751 6276 3585 2752 6585 4055 1459 601 2269 5736 268 15493 3118 1650 12012 990 1889 5725 4322 3101 4273 4989 4945 5029 4778 4165 3634 4617 3913 5010 6651 5398 3773 4130 4542 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 -0.00 -0.05 0.01 -0.08 -0.04 -0.04 0.07 -0.08 -0.02 -0.10 -0.05 -0.03 -0.01 0.02 0.00 0.01 -0.00 -0.00 ]
C [ 0.02 0.03 0.03 -0.00 0.04 0.13 -0.01 0.14 0.20 0.13 0.16 0.22 0.04 -0.03 0.06 0.07 -0.05 -0.05 0.06 0.05 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.03 0.05 0.07 -0.01 0.12 -0.03 -0.05 -0.02 -0.09 -0.04 -0.03 0.07 0.14 -0.02 0.23 0.16 -0.01 0.05 0.07 0.03 0.01 0.02 0.04 ]
T [ 0.00 -0.02 0.02 -0.02 -0.02 0.01 -0.02 -0.06 -0.07 -0.07 0.03 -0.07 0.11 -0.02 -0.03 0.04 -0.04 -0.02 0.02 -0.03 -0.04 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 828

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages