Detailed information of deep learning profile BP000083.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000083.1
Cell line/tissue: HEK293
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.13 0.22 0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.22 0.10 0.08 0.19 0.11 0.00 0.05 0.01 -0.00 0.01 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4542 4130 3773 5398 6651 5010 3913 4617 3634 4165 4778 5029 4945 4989 4273 3101 4322 5725 1889 990 12012 1650 3118 15493 268 5736 2269 601 1459 4055 6585 2752 3585 6276 3751 5369 4290 5078 4597 4601 4919 5583 4554 4961 5153 5136 5039 5026 5015 4876 ]
C [ 4554 3548 5133 5966 4453 4069 3555 4858 8012 6958 5985 5409 5232 4754 5422 6606 4679 2445 15181 18090 1313 10268 7581 460 79 190 760 510 2188 11449 2636 8523 5720 4578 4290 4133 4318 5193 5623 6294 5610 4648 5104 4841 4784 4807 4940 4848 5024 4981 ]
G [ 5020 6620 6544 3767 4635 4665 4411 4557 3349 3582 4338 4637 4566 4157 4806 3117 6111 7794 1452 399 2580 7122 1687 2356 19239 13470 11497 17981 14146 1862 8556 5459 3025 5769 5291 4657 7218 5184 5323 4119 4332 5128 5197 5127 5116 4833 4823 5203 5214 5119 ]
T [ 5668 5486 4334 4653 4045 6040 7905 5752 4789 5079 4683 4709 5041 5884 5283 6960 4672 3820 1262 305 3879 744 7398 1475 198 388 5258 692 1991 2418 2007 3050 7454 3161 6452 5625 3958 4329 4241 4770 4923 4425 4929 4855 4731 5008 4982 4707 4531 4808 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.01 -0.04 -0.03 0.02 -0.02 -0.04 0.04 -0.03 -0.02 0.11 -0.07 0.03 -0.07 -0.07 -0.06 -0.02 0.01 -0.02 -0.02 0.02 -0.02 0.00 ]
C [ 0.04 0.02 0.01 0.03 0.07 0.05 -0.01 0.16 0.23 -0.02 0.14 0.07 -0.03 -0.04 -0.09 -0.02 -0.05 -0.03 0.12 -0.01 0.07 0.05 0.03 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.05 0.06 -0.05 -0.05 0.07 0.06 -0.03 0.04 0.22 0.16 0.13 0.20 0.14 -0.01 0.13 0.04 -0.00 0.03 0.03 0.02 ]
T [ -0.00 -0.00 0.01 0.00 0.02 -0.01 -0.03 -0.05 -0.10 -0.02 -0.08 0.07 -0.04 -0.04 -0.08 0.01 -0.05 -0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 828

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages