Detailed information of deep learning profile BP000082.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in epithelial cell of esophagus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000082.1
Cell line/tissue: epithelial cell of esophagus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.02 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.08 0.05 0.14 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4673 4180 3884 5392 7090 5226 3895 4781 3893 4402 4978 5267 4938 5100 4478 3142 4657 5533 2076 829 12175 1631 3331 15605 378 6220 2533 844 1498 4387 6780 2754 3848 6370 4070 5483 4454 5276 4761 4725 5147 5869 4580 5072 5394 5501 5270 5321 5313 5118 ]
C [ 4782 3674 5044 6450 4368 4138 3555 4904 8414 7055 6194 5395 5329 4872 5768 7198 4598 2433 15385 18938 1247 10388 7758 550 184 332 1176 679 2211 11475 2418 8930 5874 4737 4323 4087 4221 5224 5848 6557 5749 4617 5138 4827 4775 4768 4821 4918 4949 5027 ]
G [ 4991 6460 6869 3789 4555 4788 4410 4585 3192 3683 4326 4731 4619 4168 4857 3042 5799 8462 1572 317 2960 7464 1939 2455 19470 13212 10572 17847 14481 1900 9206 5422 3047 5882 5361 4854 7488 5358 5290 4049 4209 5239 5493 5430 5277 4963 4953 5260 5365 5284 ]
T [ 5878 6010 4527 4693 4311 6172 8464 6054 4825 5184 4826 4931 5438 6184 5221 6942 5270 3896 1291 240 3942 841 7296 1714 292 560 6043 954 2134 2562 1920 3218 7555 3335 6570 5900 4161 4466 4425 4993 5219 4599 5113 4995 4878 5092 5280 4825 4697 4895 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.09 -0.06 0.03 -0.05 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.05 0.04 -0.01 0.12 0.18 -0.02 0.11 0.05 -0.02 -0.02 -0.06 0.00 -0.03 -0.02 0.11 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.04 0.06 -0.02 -0.03 0.07 0.05 -0.02 0.02 0.17 0.13 0.10 0.15 0.11 -0.01 0.11 0.04 0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.08 -0.03 -0.07 0.05 -0.04 -0.05 -0.06 0.01 -0.04 -0.01 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 592

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages