Detailed information of deep learning profile BP000082.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in epithelial cell of esophagus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000082.1
Cell line/tissue: epithelial cell of esophagus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.14 0.05 0.08 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.02 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4895 4697 4825 5280 5092 4878 4995 5113 4599 5219 4993 4425 4466 4161 5900 6570 3335 7555 3218 1920 2562 2134 954 6043 560 292 1714 7296 841 3942 240 1291 3896 5270 6942 5221 6184 5438 4931 4826 5184 4825 6054 8464 6172 4311 4693 4527 6010 5878 ]
C [ 5284 5365 5260 4953 4963 5277 5430 5493 5239 4209 4049 5290 5358 7488 4854 5361 5882 3047 5422 9206 1900 14481 17847 10572 13212 19470 2455 1939 7464 2960 317 1572 8462 5799 3042 4857 4168 4619 4731 4326 3683 3192 4585 4410 4788 4555 3789 6869 6460 4991 ]
G [ 5027 4949 4918 4821 4768 4775 4827 5138 4617 5749 6557 5848 5224 4221 4087 4323 4737 5874 8930 2418 11475 2211 679 1176 332 184 550 7758 10388 1247 18938 15385 2433 4598 7198 5768 4872 5329 5395 6194 7055 8414 4904 3555 4138 4368 6450 5044 3674 4782 ]
T [ 5118 5313 5321 5270 5501 5394 5072 4580 5869 5147 4725 4761 5276 4454 5483 4070 6370 3848 2754 6780 4387 1498 844 2533 6220 378 15605 3331 1631 12175 829 2076 5533 4657 3142 4478 5100 4938 5267 4978 4402 3893 4781 3895 5226 7090 5392 3884 4180 4673 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.01 -0.04 0.01 -0.06 -0.05 -0.04 0.05 -0.07 -0.03 -0.08 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 0.00 0.04 0.11 -0.01 0.11 0.15 0.10 0.13 0.17 0.02 -0.02 0.05 0.07 -0.03 -0.02 0.06 0.04 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.11 -0.02 -0.03 0.00 -0.06 -0.02 -0.02 0.05 0.11 -0.02 0.18 0.12 -0.01 0.04 0.05 0.03 0.02 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.05 0.03 -0.06 0.09 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 592

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages