Detailed information of deep learning profile BP000080.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in choroid plexus epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000080.1
Cell line/tissue: choroid plexus epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.09 0.14 0.05 0.08 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.06 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.16 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 5310 5103 5308 5670 5548 5238 5360 5380 5194 5653 5422 4750 4834 4503 6395 6963 3699 8146 3512 2280 2856 2034 995 5420 560 349 1887 7491 1005 4617 458 1463 4302 5252 7396 5619 6636 5826 5258 5212 5627 5371 6473 8475 6494 4784 5203 5025 6206 6137 ]
C [ 5767 6140 5921 5596 5643 6040 5997 6111 5898 4992 4679 6141 6046 8411 5397 6169 6648 3558 6189 10154 2111 16440 19962 12738 15180 21578 2954 2195 8379 3693 494 2047 9026 6777 3584 5436 4740 5372 5425 4999 4347 3981 5251 5138 5401 5335 4543 7275 7109 5670 ]
G [ 5581 5619 5540 5620 5547 5446 5400 5718 5188 6306 7092 6369 5718 4758 4654 4999 5183 6573 9603 2913 12427 2394 673 1233 368 138 617 8965 11002 1704 19861 16270 3073 5260 7814 6494 5483 5900 5964 6792 7633 8779 5574 4244 4888 5017 6859 5772 4436 5316 ]
T [ 5844 5640 5733 5616 5764 5778 5745 5293 6222 5551 5309 5242 5904 4830 6056 4371 6972 4225 3198 7155 5108 1634 872 3111 6394 437 17044 3851 2116 12488 1689 2722 6101 5213 3708 4953 5643 5404 5855 5499 4895 4371 5204 4645 5719 7366 5897 4430 4751 5379 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 -0.01 -0.04 0.01 -0.06 -0.04 -0.03 0.05 -0.06 -0.03 -0.08 -0.05 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 0.00 0.04 0.11 -0.01 0.12 0.15 0.09 0.12 0.17 0.03 -0.02 0.05 0.06 -0.03 -0.02 0.05 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.00 0.10 -0.02 -0.03 0.00 -0.06 -0.03 -0.02 0.05 0.10 -0.02 0.17 0.12 -0.01 0.04 0.05 0.03 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.05 -0.06 -0.05 0.03 -0.05 0.08 -0.02 -0.03 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 579

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages