Detailed information of deep learning profile BP000080.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in choroid plexus epithelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000080.1
Cell line/tissue: choroid plexus epithelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 0.00 0.05 0.02 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.06 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.08 0.05 0.14 0.09 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 5379 4751 4430 5897 7366 5719 4645 5204 4371 4895 5499 5855 5404 5643 4953 3708 5213 6101 2722 1689 12488 2116 3851 17044 437 6394 3111 872 1634 5108 7155 3198 4225 6972 4371 6056 4830 5904 5242 5309 5551 6222 5293 5745 5778 5764 5616 5733 5640 5844 ]
C [ 5316 4436 5772 6859 5017 4888 4244 5574 8779 7633 6792 5964 5900 5483 6494 7814 5260 3073 16270 19861 1704 11002 8965 617 138 368 1233 673 2394 12427 2913 9603 6573 5183 4999 4654 4758 5718 6369 7092 6306 5188 5718 5400 5446 5547 5620 5540 5619 5581 ]
G [ 5670 7109 7275 4543 5335 5401 5138 5251 3981 4347 4999 5425 5372 4740 5436 3584 6777 9026 2047 494 3693 8379 2195 2954 21578 15180 12738 19962 16440 2111 10154 6189 3558 6648 6169 5397 8411 6046 6141 4679 4992 5898 6111 5997 6040 5643 5596 5921 6140 5767 ]
T [ 6137 6206 5025 5203 4784 6494 8475 6473 5371 5627 5212 5258 5826 6636 5619 7396 5252 4302 1463 458 4617 1005 7491 1887 349 560 5420 995 2034 2856 2280 3512 8146 3699 6963 6395 4503 4834 4750 5422 5653 5194 5380 5360 5238 5548 5670 5308 5103 5310 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.03 -0.02 0.08 -0.05 0.03 -0.05 -0.06 -0.05 -0.01 0.01 -0.02 -0.01 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.05 0.04 -0.01 0.12 0.17 -0.02 0.10 0.05 -0.02 -0.03 -0.06 0.00 -0.03 -0.02 0.10 -0.00 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.03 0.06 0.05 -0.02 0.03 0.17 0.12 0.09 0.15 0.12 -0.01 0.11 0.04 0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.05 -0.08 -0.03 -0.06 0.05 -0.03 -0.04 -0.06 0.01 -0.04 -0.01 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 579

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages