Detailed information of deep learning profile BP000078.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in cardiac fibroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000078.1
Cell line/tissue: cardiac fibroblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTF
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.01 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.02 0.01 -0.00 0.11 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 0.00 0.03 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.21 0.09 0.07 0.18 0.11 0.00 0.05 0.01 -0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4887 4208 3982 5580 7444 5302 3973 4844 3875 4378 5029 5323 5104 5377 4584 3205 4662 5822 2128 1022 12462 1689 3458 16336 359 6476 2274 732 1460 4299 7138 2907 3805 6614 4145 5757 4634 5423 4873 4886 5324 6026 4734 5326 5506 5546 5343 5351 5431 5267 ]
C [ 4889 3717 5216 6503 4335 4190 3563 4977 8735 7262 6285 5566 5403 4728 5703 7138 4669 2466 15837 19150 1280 10913 7933 546 132 279 1071 617 2113 12134 2557 9073 6144 4799 4324 4217 4252 5430 6008 6723 5941 4608 5415 4884 4837 4838 4914 5020 5132 5102 ]
G [ 5042 6811 7009 3822 4753 4994 4515 4695 3225 3681 4471 4935 4639 4269 5058 3150 6477 8485 1459 311 3261 7356 1691 2399 20017 13528 11937 18510 15199 1871 9094 5654 3018 6096 5515 4896 7729 5523 5483 4010 4307 5427 5510 5483 5384 5056 5057 5478 5375 5339 ]
T [ 5929 6011 4540 4842 4215 6261 8696 6231 4912 5426 4962 4923 5601 6373 5402 7254 4939 3974 1323 264 3744 789 7665 1466 239 464 5465 888 1975 2443 1958 3113 7780 3238 6763 5877 4132 4371 4383 5128 5175 4686 5088 5054 5020 5307 5433 4898 4809 5039 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.04 -0.02 0.02 -0.02 -0.05 0.04 -0.04 -0.03 0.11 -0.08 0.04 -0.07 -0.07 -0.06 -0.02 0.02 -0.03 -0.02 0.02 -0.02 0.01 ]
C [ 0.03 0.01 0.01 0.03 0.06 0.04 -0.02 0.14 0.21 -0.04 0.13 0.05 -0.03 -0.04 -0.09 -0.01 -0.04 -0.02 0.13 -0.01 0.07 0.05 0.03 0.02 0.01 ]
G [ 0.01 0.02 0.01 0.01 -0.01 0.05 0.06 -0.04 -0.05 0.08 0.06 -0.03 0.03 0.22 0.15 0.12 0.19 0.13 -0.02 0.13 0.05 -0.01 0.03 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.02 -0.02 -0.06 -0.10 -0.03 -0.08 0.07 -0.05 -0.06 -0.09 0.00 -0.05 -0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.02 0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages