Detailed information of deep learning profile BP000078.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in cardiac fibroblast using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000078.1
Cell line/tissue: cardiac fibroblast
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTF
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 -0.00 0.01 0.05 0.00 0.11 0.18 0.07 0.09 0.21 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.03 0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.11 -0.00 0.01 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.01 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 5039 4809 4898 5433 5307 5020 5054 5088 4686 5175 5128 4383 4371 4132 5877 6763 3238 7780 3113 1958 2443 1975 888 5465 464 239 1466 7665 789 3744 264 1323 3974 4939 7254 5402 6373 5601 4923 4962 5426 4912 6231 8696 6261 4215 4842 4540 6011 5929 ]
C [ 5339 5375 5478 5057 5056 5384 5483 5510 5427 4307 4010 5483 5523 7729 4896 5515 6096 3018 5654 9094 1871 15199 18510 11937 13528 20017 2399 1691 7356 3261 311 1459 8485 6477 3150 5058 4269 4639 4935 4471 3681 3225 4695 4515 4994 4753 3822 7009 6811 5042 ]
G [ 5102 5132 5020 4914 4838 4837 4884 5415 4608 5941 6723 6008 5430 4252 4217 4324 4799 6144 9073 2557 12134 2113 617 1071 279 132 546 7933 10913 1280 19150 15837 2466 4669 7138 5703 4728 5403 5566 6285 7262 8735 4977 3563 4190 4335 6503 5216 3717 4889 ]
T [ 5267 5431 5351 5343 5546 5506 5326 4734 6026 5324 4886 4873 5423 4634 5757 4145 6614 3805 2907 7138 4299 1460 732 2274 6476 359 16336 3458 1689 12462 1022 2128 5822 4662 3205 4584 5377 5104 5323 5029 4378 3875 4844 3973 5302 7444 5580 3982 4208 4887 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.04 0.03 -0.01 -0.07 -0.03 -0.01 -0.05 0.00 -0.09 -0.06 -0.05 0.07 -0.08 -0.03 -0.10 -0.06 -0.02 -0.02 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.03 -0.01 0.05 0.13 -0.02 0.13 0.19 0.12 0.15 0.22 0.03 -0.03 0.06 0.08 -0.05 -0.04 0.06 0.05 -0.01 0.01 0.01 0.02 0.01 ]
G [ 0.01 0.02 0.03 0.05 0.07 -0.01 0.13 -0.02 -0.04 -0.01 -0.09 -0.04 -0.03 0.05 0.13 -0.04 0.21 0.14 -0.02 0.04 0.06 0.03 0.01 0.01 0.03 ]
T [ 0.01 -0.02 0.02 -0.02 -0.03 0.02 -0.02 -0.06 -0.07 -0.07 0.04 -0.08 0.11 -0.03 -0.04 0.04 -0.05 -0.02 0.02 -0.02 -0.04 -0.01 0.00 -0.00 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages