Detailed information of deep learning profile BP000077.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in brain microvascular endothelial cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000077.1
Cell line/tissue: brain microvascular endothelial cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.00 -0.00 ]
C [ 0.01 -0.00 0.01 0.04 0.00 0.09 0.14 0.05 0.08 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 0.00 0.06 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.16 0.10 -0.00 0.01 0.02 0.00 ]
T [ 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.01 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 5400 5206 5295 5635 5461 5404 5359 5469 5144 5729 5302 4843 4965 4596 6369 6967 3709 8022 3702 2401 2888 2252 1091 5512 557 285 1818 7886 890 4332 383 1369 4272 5201 7716 5533 6666 5755 5216 5164 5498 5478 6476 8794 6522 4678 5188 4990 6294 6172 ]
C [ 5704 5951 5816 5498 5752 5827 5884 5993 5788 5050 4739 5920 5929 7972 5324 6016 6599 3665 6041 9604 2268 15649 19497 12767 15238 21548 2976 2062 8058 3347 463 1717 8891 6889 3388 5475 4766 5185 5268 4857 4168 3811 5128 5024 5291 5143 4353 7352 7057 5522 ]
G [ 5498 5602 5555 5517 5333 5286 5435 5635 5141 6204 7039 6301 5691 4851 4768 4894 5260 6443 9400 3138 12279 2724 860 1218 301 145 549 8674 11491 1577 20181 16893 2992 5229 7775 6438 5234 5912 5997 6824 7840 8958 5509 4158 4778 5072 6915 5701 4262 5351 ]
T [ 5730 5573 5666 5682 5786 5815 5654 5235 6259 5349 5252 5268 5747 4913 5871 4455 6764 4202 3189 7189 4897 1707 884 2835 6236 354 16989 3710 1893 13076 1305 2353 6177 5013 3453 4886 5666 5480 5851 5487 4826 4085 5219 4356 5741 7439 5876 4289 4719 5287 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.03 0.02 -0.01 -0.05 -0.03 -0.01 -0.04 0.00 -0.07 -0.05 -0.03 0.05 -0.07 -0.03 -0.08 -0.05 -0.02 -0.01 0.01 0.00 0.01 -0.00 -0.01 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.04 0.10 -0.00 0.11 0.15 0.09 0.13 0.17 0.03 -0.02 0.05 0.07 -0.03 -0.03 0.05 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.02 0.01 0.02 0.02 0.03 0.06 -0.00 0.10 -0.02 -0.03 -0.00 -0.07 -0.03 -0.02 0.05 0.10 -0.02 0.17 0.12 -0.01 0.04 0.05 0.03 0.01 0.02 0.02 ]
T [ -0.00 -0.01 0.00 -0.02 0.01 -0.02 -0.02 0.01 -0.01 -0.05 -0.06 -0.05 0.03 -0.06 0.08 -0.02 -0.03 0.03 -0.03 -0.02 0.02 -0.02 -0.03 -0.01 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 139

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages